Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1739 ATGGCATTGAATAATCTACTCTTTGATGATATAACGTCTCACAGGGATGCTAGTGATGTTGATCTTCATAAGAATGAAAAGTCAACAAATGTTGCTGAATTGGTGAATGATCCTACACAAACTGCTTCTAAACCTACTGAGATTGTTTTAAGCAGTGAGAATGTTTTAAACAGTGTTCGCGAGCTTTTAGAGTGTCCTGTATGCATGAATCGCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACGCTATATGCCCAAGTTGCAAACCTAGGGTACAAAACCAGTGCCCTACGTGTAGGCATGAGCTGGGAAATATTAGATGTTTAGCACTGGAGAAGGTGGCTGAATCTTTTGCACTCCCCTGTAAATACATAAATTTTCATGCTCAAGCTGGCATACAAGCTGAAGTTTCTAAAAATTGGCCGATGCAAGTGGGTGAAGTTCAGGATGCAGGGTTGTCTGATCAAGCTCCAAGCTGGATGCAAGGACTTGAAGATAGGATTGTTCATAGGATTGTTCAGCGCATGGAGAACATGACGGCGTCCGAGATGGCAAAGATGAATGATAAATTTGCAAAGATGCAGGATGAGATGGAAAAGAGACTCTCAGCAAAGTTGGAGGATCGGTTGGAAAAGATGGAGGATGAGATGGAAAAGAGGCTGGCAAAGTTGGAGGATCGGTTGGAAAAGATGGACGAGATATCGAAGAAAAATGATCATATGTTTGCCCAGTTATCTCTTCCACCACCACCACAACACCCTTAA 768 0.4245 MALNNLLFDDITSHRDASDVDLHKNEKSTNVAELVNDPTQTASKPTEIVLSSENVLNSVRELLECPVCMNRMYPPIHQCSNGHAICPSCKPRVQNQCPTCRHELGNIRCLALEKVAESFALPCKYINFHAQAGIQAEVSKNWPMQVGEVQDAGLSDQAPSWMQGLEDRIVHRIVQRMENMTASEMAKMNDKFAKMQDEMEKRLSAKLEDRLEKMEDEMEKRLAKLEDRLEKMDEISKKNDHMFAQLSLPPPPQHP* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1739 255 Coils Coil 197 235 - -
Mal5g1739 255 SUPERFAMILY RING/U-box 57 105 - -
Mal5g1739 255 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 142 - -
Mal5g1739 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 123 IPR013083 -
Mal5g1739 255 PANTHER OS07G0659800 PROTEIN 1 142 - -
Mal5g1739 255 CDD RING-HC_SIAHs 63 101 - -
Mal5g1739 255 ProSiteProfiles Zinc finger RING-type profile. 65 101 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1739 Mal-Chr5 34430740 34432126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1739 38 131 C3H Transcription Factor Family AT2G41980 64.894 1.53e-36 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1739 K04506 - gmx:100781022 176.407