Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1738 ATGGCATTAAGTAATCCACTCTTTGATGATGATATACGGAGCAACAATGATGTTGATCCTCCTAACAATGAAGAGTCAATAGATGGTGAATTGGTGAATGATGATCCTATACAAACTGTTTCTGAACCTACTGAGACTGTTTTAAGCAACGAGACTATTTTAAGCAGTGTTCGCGAGCTTTTAGAGTGTCCTGTATGCCTGAATCGTATGTACCCTTCAATCCATCAGTGTTCAAATGGTCACACTATATGCCCACGTTGCAAACCTAGAGTACATAACAGGTGCCCTACGTGTAGACGTAAGCTGGGAAATATTAGATGTTTAGCATTGGAGAAGGTGGCTGCATCTTTTGCACTCCCCTGTAAATACGTAAGTGTTCATTTTCAAGCTGAAATACATGATGAAGTACAAGCGGAAGTACAAGCTGAAGTTTCTAAAAATTGGCCAATGCAAGAGGGTAAAGCTCAGGATGTAGGGTCGTTTGATCAAGCTCCAAGCTGGAAGCAAGGACTTGAAGACAGGATTGTTCATAGGATTGCTCAGCGCATAGAGAACAAGATGGAATCTGAGATGGCGAAGTTGACGGATGAGATGGATAAGAGAGCCCTAGCAAAGGTGCAGGATGAGATGGAAAAGATGAAGGATGATTTGGTAAAGATAATCCTGGCAAAGTTGAAGGATGAGATGGTAGATGATTCAGGCAAAGGTGTAGGATGA 717 0.4184 MALSNPLFDDDIRSNNDVDPPNNEESIDGELVNDDPIQTVSEPTETVLSNETILSSVRELLECPVCLNRMYPSIHQCSNGHTICPRCKPRVHNRCPTCRRKLGNIRCLALEKVAASFALPCKYVSVHFQAEIHDEVQAEVQAEVSKNWPMQEGKAQDVGSFDQAPSWKQGLEDRIVHRIAQRIENKMESEMAKLTDEMDKRALAKVQDEMEKMKDDLVKIILAKLKDEMVDDSGKGVG* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1738 238 MobiDBLite consensus disorder prediction 1 30 - -
Mal5g1738 238 ProSiteProfiles Zinc finger RING-type profile. 63 99 IPR001841 -
Mal5g1738 238 Coils Coil 180 200 - -
Mal5g1738 238 PANTHER OS07G0659800 PROTEIN 1 125 - -
Mal5g1738 238 SUPERFAMILY RING/U-box 62 104 - -
Mal5g1738 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 120 IPR013083 -
Mal5g1738 238 Coils Coil 203 223 - -
Mal5g1738 238 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 125 - -
Mal5g1738 238 CDD RING-HC_SIAHs 61 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1738 Mal-Chr5 34424329 34425902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1738 22 123 C3H Transcription Factor Family AT2G41980 54.286 2.13e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1738 K04506 - gmx:100793457 178.718