Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1719 ATGGCTTATCGTCCATATAAACACTATAAACACAAAGACATACCAATCACAACTCATTACACCCAACTTCCGATATTGACAGCCCGTGCACATTACGAAGATTTGATAGAGGAAGCAAGAACTTGTATTACTCAAGACAACTATGAGGAATTGACACTATCGGTGCTTCCCAAACTCCGCAAACTTTGTGTACATTTTATAGTATACAATGAACACATTGATCAAGTTTTTTATACTGCTCATCGTAAAGAATTCGAGTACCAAGATGTTTCAACAAACCTCCATTTGCAATCAATCCTAACAAGGAGAGTACTACAAGAAAAAGATAAGTGTTCAATTTGTCTCTCTATTCCTTCTCATGCAGTAATAACAAGATGTACTCACGTTTTCTGCTACAAGTGCATCAGAAAATGGTTCACCCGCGACAAATCGTTTTTTGACCCTAATTACAAAGACCCTACATCCTGTCCTGATTGTAGAGGTTTACTCAAATTAAATGACATGTTCTCTGAAACAAAGCCAACTACTAAGGTGGAAATTCTAATCCAGCTTCTGAGAGAAGACAATACTCGTACTAAGTCGGTCATATTTACGCGTTATGATATTACCGTGCTCTATTTTCATACACGTTTGGGAATTGCAGGTTTCAAAACTTTCCCCTATACTACCAAAGCATTGCCTCGCAATAGAAATAAGATCAAGGAATTTGAAAACATTGAAGAACCAGGAGTCTTGCTTATAGACTTTGAAACTTCGCGCAGACGTCGAGTTACTATAAATGCTGCATGCAGAGTCTTCCTATTGGATGCATGTAGGAAATCTATCGAGGAAGAGTTAGTGGCTCGTGTGAGACAACCATTGTCTGTTTTGAGATTGATATCTCAAAACACTATTGAAGATAAAATACTATCGTTGAAGGAGCCATTTTCTCAGACTGACACTTTTGATTTCGTTGACAAGGAGACCCTAAGATACATATTCCAACAAGATTGA 993 0.3766 MAYRPYKHYKHKDIPITTHYTQLPILTARAHYEDLIEEARTCITQDNYEELTLSVLPKLRKLCVHFIVYNEHIDQVFYTAHRKEFEYQDVSTNLHLQSILTRRVLQEKDKCSICLSIPSHAVITRCTHVFCYKCIRKWFTRDKSFFDPNYKDPTSCPDCRGLLKLNDMFSETKPTTKVEILIQLLREDNTRTKSVIFTRYDITVLYFHTRLGIAGFKTFPYTTKALPRNRNKIKEFENIEEPGVLLIDFETSRRRRVTINAACRVFLLDACRKSIEEELVARVRQPLSVLRLISQNTIEDKILSLKEPFSQTDTFDFVDKETLRYIFQQD* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1719 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 168 IPR013083 -
Mal5g1719 330 ProSiteProfiles Zinc finger RING-type profile. 111 160 IPR001841 -
Mal5g1719 330 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 19 307 - -
Mal5g1719 330 SUPERFAMILY RING/U-box 110 165 - -
Mal5g1719 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 307 IPR027417 -
Mal5g1719 330 Pfam Zinc finger, C3HC4 type (RING finger) 111 159 IPR018957 GO:0046872
Mal5g1719 330 ProSitePatterns Zinc finger RING-type signature. 126 135 IPR017907 -
Mal5g1719 330 SMART ring_2 111 159 IPR001841 -
Mal5g1719 330 Gene3D - 26 328 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1719 Mal-Chr5 33865654 33867501 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1719 47 307 RAD5 or RAD16-like Gene Family AT5G05130 29.553 3.70e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1719 - K15711 mtr:MTR_8g038520 385.956