Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1704 ATGGATTCATCGGTTCAGCTGTTACCAGCTGAACGCCCCGCTACGATCGGAATTTCATCTGAGGATGGATGCAAAAAACTTAAATTATCAAGTGATAGCTTGCCATATTCAGCACAAGTTAAGGTTGTAGATTACAGCAATCCGTATGCAGTCAGAGATGTTATAAACAGTTTAGAGAGTGGACAGTTTGGCAGTGTTACAAAGGATATTGAATCTCTTATAACCCGAAAAATGCAAGTATTGGGCCCTTACTTTGCTAAATATCCTAGCCTTGTTAATCAATTCTTGAATGTGGTGACGGATCATGATGAAGAAACCTACCACACGGAAAATAAAAAAGTTACTGGTGTGTCAAATCAAAATGTCATAGATCTGGATGGAGGGCAAATTCAAAAGGATGTTGTGGCACCAAAAAGAGAAAAGGATGTTCCTGCTGCACCATTCCCTGTTGTTATAATTGATTCAGATGAGGAGGATGATAGGGATCAAAAGTCTTTTCTTCCGTTTCATGAAGTTGTATTGCCGAAACGGCAGTCTCCTGCATTAAAAATGATAGGCTATCATCCTCCCAATGCTTACCATGGAGAAAGTGCAGATCTAAAATTTGATACAAGTCTGCCTCCTAATGTATACCGTGGAGCAAGTGCAGAGCTAAAATTTGAAACAACTCTGCCTCCTAAAGACAACCCAAGGAAAGATAAAGGTGTTTATGTTGGTGTACATGACGAAGAAGATAATACGGTTGATGCTGAAGATGACGGGCTAGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAAACTTCTAAAGATGTTTCTGCAGATCCTCCACCCGAAGAAGAAGAGGAAGAAGATGCTGACTGTGATCATTCTTTCGTTTTAAAAGACGATCTTGGATATGTTTGTCGTGTTTGTGGGGTTATTGATAGAGGAATTGAAACTATATTTGAGTTTCAATACAAGGTTAAAAGGAGCACAAGGACTTATATGTCTGATTCGTCCAATGCCAAAGAAAAAGTTGATGCGTTTGGAGTTAAGATTGCTGAAGACGATTTCATGGTAACCGATATATCAGCCCATCCTCGGCATGCGAATCAAATGAAACCACACCAAGTTGAAGGATTCAACTTTCTCGTCAGAAACTTGGCGGGGGACCATCCTGGGGGATGCATCCTCGCTCATGCTCCAGGATCTGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGCTTTCTAGGAAAGTATCCCAATGCCCGACCTCTGGTGGTGCTTCCCAAGGGAATATTGTCGACTTGGAAAAAAGAGTTTCAAACATGGCAAGTGGAAGATATACCGCTTTTTGACCTATACACTGTGAAGGCTGATAGTAGATCTCAGCAACTGGAGGTGTTAAAACAATGGATGGATAACAAAAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCCATTGTGTGTGATAATAGTAATAACAATGCATCAACATCTTGCCAAGAGATATTGCTCAAGGTTCCCTCAATTCTCATTTTAGATGAGGGGCACACTCCAAGAAATGAGAATACTGATATTGTACAGTCCCTTGCCAAAGTACATACACCAAGGAAAGTTGTATTGTCTGGAACCCTTTATCAAAATCATGTTAGGGAGGTATTCAACGTTCTCAATCTGGTGCGGCCGAAGTTTTTAAAGATGGAAACGTCTAAGCCTATTGTCCGACGCATTCAGAGTAGAATCCATATACCTGGCGTGAAACGCTTTGATGATTTGGTTGAGAATACATTACAAAAGGACCCGGATTTCAAAAGGAAAGTGGCTGTAATTCATGATTTACGTGAGATGACGAGCAAAGTTCTTCACTACTACAAAGGGGATTTTCTTGATGAGCTTCCTGGCCTTGTGGATTTCACTGTGGTGCTCAGACTTACGCCCAGACAGAAGATTGAAGTTGAGAAAGTAAAGAGGATGTATGTTAGAAAGTTCAAAATGTCTTCTGTAGGCAGTGCAGTGTATCTGCACCCGAAGTTGAAGCCAATTGCAGAGAAATGTGATGAAAATTCCATACATGATCATATAATGGATGATTTTATAGCGGACCTAGATGTGAGAGATGGGGTCAAATCAAAGTTCTTCCGCAATATGCTGAACCTATGCGAATCATCTGGGGAGAAACTTCTGGTGTTCAGTCAATATCTCCTGCCTTTGAAATATTTGGAAAGGTTAGCTATGAAGTGGAAGGGATGGAGTCTAGGAAAAGAAATATTTGTGATTTCAGGAGAATCATCCTATGAACAAAGAGAGTTTTCCATGGAAAAGTTTAACAATTCACCTGAGGCAAAAATATTTTTTGGGTCAATCAAAGCATGCGGTGAGGGTATATCGTTGGTTGGGGCATCCCGTGTCATCATCTTAGATGTTCATCTCAACCCGTCTATTACTCGCCAAGCTATTGGTCGTGCTTTTCGGCCAGGGCAGAAAAAGAAAGTCTTTGTGTATCGATTAATAGCTGCTGATTCTCCAGAAGAGGAAGATCACAATACTTGTTTCAAGAAGGAATTAATCTCCAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGATCGTGCATTTGAAGTTGAAACGCTTGATGTGAAAGACTGCGGCGATTTGTTTCTCGAGAGCCCATTGCTAGGAGAAGATGTAAAATCACTGTATAAAAGGTAA 2700 0.4044 MDSSVQLLPAERPATIGISSEDGCKKLKLSSDSLPYSAQVKVVDYSNPYAVRDVINSLESGQFGSVTKDIESLITRKMQVLGPYFAKYPSLVNQFLNVVTDHDEETYHTENKKVTGVSNQNVIDLDGGQIQKDVVAPKREKDVPAAPFPVVIIDSDEEDDRDQKSFLPFHEVVLPKRQSPALKMIGYHPPNAYHGESADLKFDTSLPPNVYRGASAELKFETTLPPKDNPRKDKGVYVGVHDEEDNTVDAEDDGLEDIWREMSMAIETSKDVSADPPPEEEEEEDADCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYMSDSSNAKEKVDAFGVKIAEDDFMVTDISAHPRHANQMKPHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLFDLYTVKADSRSQQLEVLKQWMDNKSILFLGYKQFSSIVCDNSNNNASTSCQEILLKVPSILILDEGHTPRNENTDIVQSLAKVHTPRKVVLSGTLYQNHVREVFNVLNLVRPKFLKMETSKPIVRRIQSRIHIPGVKRFDDLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLRLTPRQKIEVEKVKRMYVRKFKMSSVGSAVYLHPKLKPIAEKCDENSIHDHIMDDFIADLDVRDGVKSKFFRNMLNLCESSGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGESSYEQREFSMEKFNNSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSITRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHNTCFKKELISKMWFEWNEYCGDRAFEVETLDVKDCGDLFLESPLLGEDVKSLYKR* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1704 899 PANTHER PROTEIN CHROMATIN REMODELING 35 21 899 - -
Mal5g1704 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 576 IPR027417 -
Mal5g1704 899 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 899 IPR044567 GO:0080188
Mal5g1704 899 Gene3D - 630 886 IPR027417 -
Mal5g1704 899 Gene3D - 334 586 IPR038718 -
Mal5g1704 899 Pfam SNF2-related domain 387 592 IPR000330 GO:0005524|GO:0140658
Mal5g1704 899 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 709 877 IPR001650 -
Mal5g1704 899 SMART ultradead3 363 573 IPR014001 -
Mal5g1704 899 CDD SF2_C_SNF 706 834 - -
Mal5g1704 899 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 381 560 IPR014001 -
Mal5g1704 899 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 862 IPR027417 -
Mal5g1704 899 SMART helicmild6 738 823 IPR001650 -
Mal5g1704 899 Pfam Helicase conserved C-terminal domain 714 822 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1704 Mal-Chr5 33643720 33650425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1704 720 851 RAD5 or RAD16-like Gene Family AT5G43530 36.364 1.04e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal5g1704 SNF2_N 2e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1704 K10875 - gmx:100780454 1379