Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1682 ATGACAGATCCTCAATCAAACTTTTTTGATGAATGGTTCAATTTCATGCTCCTCAACCCTCATCATCATCATCACTACTCTTCTTCTTCTTCTTCTTCTCACCAAACCAACATGTTTGAAATTCAATCTCATGATCAACCCTCCTCCTCCTCATCCACCATAAATCCTCCTTCCCCTCCTCTTAGAGAAGCTCTTCCTCTCATTAACAAACTAAGCCTCATAAACCATCAACAACAAAATGAACCCTCAAACAATATTAATACTAAATCAATAGAAGAGGAATTACAAGACAGTAGAATGGAAAGGCATGAATATGATCATGATGATGATGTTGCACTACAAATAGGGCTTCCTAGTAGTTCTTCTGATCTTGGATCAAGGATGGTCTCACCAAATTGCATAGAAATGGCTGAAAAAGAGGAGATTAATATGATTTCTGAACAACAACAACAACCTTTGGATAAATTGAATAACAAGGGTCAGTATTGGATTCCAACACCTTCTCAAATTCTCATTGGTCCTACACAATTCTCATGTCCTGTGTGCTGTAAAACTTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCTCAGTACAGAAAGGGGCCAGATTCTCTAAAAGGATCACAACCAACAGCAATGTTAAGGCTACCATGCTATTGTTGTGCACCAGGTTGCAAGCACAACATTGATCATCCTAGAGCAAAGCCTCTAAAAGATTTTAGAACTCTTCAAACACATTATAAGAGAAAGCATGGTATAAAACCTTATATGTGTAGAAAATGTGGCAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTGTGTGGCTCAGATTTTAAACATAAAAGGTCTCTTAAAGACCATATTAAAGCCTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGTAGGGTCAGAAATTGAACATGATGGTGGAAGTTCAATGTAA 1017 0.3736 MTDPQSNFFDEWFNFMLLNPHHHHHYSSSSSSSHQTNMFEIQSHDQPSSSSSTINPPSPPLREALPLINKLSLINHQQQNEPSNNINTKSIEEELQDSRMERHEYDHDDDVALQIGLPSSSSDLGSRMVSPNCIEMAEKEEINMISEQQQQPLDKLNNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNLQMHMWGHGSQYRKGPDSLKGSQPTAMLRLPCYCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYMCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEVGSEIEHDGGSSM* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1682 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 177 204 IPR013087 -
Mal5g1682 338 Gene3D Classic Zinc Finger 239 310 - -
Mal5g1682 338 PANTHER ZINC FINGER PROTEIN WIP2 1 333 IPR043584 GO:0003700|GO:0010468
Mal5g1682 338 SUPERFAMILY beta-beta-alpha zinc fingers 170 199 IPR036236 -
Mal5g1682 338 Gene3D Classic Zinc Finger 176 199 - -
Mal5g1682 338 SMART c2h2final6 261 281 IPR013087 -
Mal5g1682 338 SMART c2h2final6 177 199 IPR013087 -
Mal5g1682 338 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 333 - -
Mal5g1682 338 MobiDBLite consensus disorder prediction 41 63 - -
Mal5g1682 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 281 IPR013087 -
Mal5g1682 338 SUPERFAMILY beta-beta-alpha zinc fingers 247 281 IPR036236 -
Mal5g1682 338 MobiDBLite consensus disorder prediction 41 58 - -
Mal5g1682 338 ProSitePatterns Zinc finger C2H2 type domain signature. 179 199 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1682 Mal-Chr5 33087810 33090440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1682 1 331 C2H2 Transcription Factor Family AT3G57670 56.383 4.19e-126 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g1682 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1682 - - gmx:100794446 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1682 5 33087810 33090440 Mal5g1682 5 33087810 33090440 ECH