Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1646 ATGGCAGCTAGAAATATGAAACTTGACTACATAGCTAACGACTCGAAGAGGAAGGCAACATTCAAAAAAAGGAAACATGGTATAATGAAAAAGATTAATGAAATTACCACCCTTTGTGCAATCGATGCATGTAGTATCATCTATGATGAAAACAATCCTCGAGCTACGGTTTTTCCATCAGAAGATGGAGTACATATGGTGTTGGATAGGTTCAGAAATTTTCCTGGATCTGTACAAAGAAAAATGATGGTGGACCATGAGTGCTTCTTGAGGCAAACTATATCGAGATCCCAAGAAAAGTTGAAGAAACAAATGGAAAACACGAAGAATAATGAAATAAATAATCTAATTGGTCATTTCATTCATACAGGTGAATTTGATGGAAATGTGAACGAAAGTGATCTCGAAGATCTATCATTGCTTATTGATGAGAACCTAAAGGAAGTAAAACAAAGGATCGAATGGATTCAAGCCCAGACCCAAGACCAATAG 492 0.3618 MAARNMKLDYIANDSKRKATFKKRKHGIMKKINEITTLCAIDACSIIYDENNPRATVFPSEDGVHMVLDRFRNFPGSVQRKMMVDHECFLRQTISRSQEKLKKQMENTKNNEINNLIGHFIHTGEFDGNVNESDLEDLSLLIDENLKEVKQRIEWIQAQTQDQ* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1646 163 PANTHER MADS BOX PROTEIN 3 158 - -
Mal5g1646 163 Coils Coil 91 111 - -
Mal5g1646 163 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mal5g1646 163 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 158 - -
Mal5g1646 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mal5g1646 163 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g1646 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g1646 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g1646 163 CDD MADS_SRF_like 4 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal5g1646 163 SUPERFAMILY SRF-like 5 94 IPR036879 GO:0003677|GO:0046983
Mal5g1646 163 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1646 Mal-Chr5 32338956 32339861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1646 6 157 Type I MADS-box Gene Family AT1G65330 39.869 8.99e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g1646 SRF-TF 4.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1646 - - mtr:MTR_2g035580 198.364