Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1645 ATGATTACAAGAAAGGTGAAACTTGCCTTCATTGTCAACGATGCTGCAAGGAAAACAACATACAAGAAAAGGAAGAAAGGTCTATTCAAGAAGGTTGATGAACTAAGCACTCTTTGTGGAATTGAAGCTTGTGCTATAGTTTATGGTCCTTATGAACCACAACTTGAGATTTGGCCATCCCCTTGGGGAGTCCAAAAGAGCAAGAAAATGATGAATCAAGAAACTTTCATGAAACAAAGGGTGATGAAGGCTAACGAGCAAGTGAAGAAGCAAAGGAAAGACAATAGAGAGAAAGAGATGACCCTTCTAATGTTTCAATGTCTTAATGCAGGGAAAGTTTTTCACAACAATATGTCAATGGTTGATGTGAATGATCTTTCTTGGTTGATTGACCAAAATTTGAAGGACATTGGTAGAAGGTTGGAAGAAGGGGATACTAATGGTCAAATTCAAAAAATGGCAATGATGGGTCATGACCATGTTGGGATGTCTATGAATAATGGTGACATCATGCAAAGGCAATTCTTTATGGATTTGATGATGAATGGTAACGGGGATGATACAATTCCATTTGGTTATCCTCATGATGCCAATCTTCAAAATGTATTTTGGCCTAATCTATTACCTTGA 630 0.3746 MITRKVKLAFIVNDAARKTTYKKRKKGLFKKVDELSTLCGIEACAIVYGPYEPQLEIWPSPWGVQKSKKMMNQETFMKQRVMKANEQVKKQRKDNREKEMTLLMFQCLNAGKVFHNNMSMVDVNDLSWLIDQNLKDIGRRLEEGDTNGQIQKMAMMGHDHVGMSMNNGDIMQRQFFMDLMMNGNGDDTIPFGYPHDANLQNVFWPNLLP* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1645 209 Coils Coil 81 101 - -
Mal5g1645 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g1645 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g1645 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal5g1645 209 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 150 - -
Mal5g1645 209 SUPERFAMILY SRF-like 4 78 IPR036879 GO:0003677|GO:0046983
Mal5g1645 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g1645 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal5g1645 209 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
Mal5g1645 209 PANTHER MADS BOX PROTEIN 4 150 - -
Mal5g1645 209 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1645 Mal-Chr5 32319643 32320373 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1645 1 142 Type I MADS-box Gene Family AT5G48670 54.487 9.06e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g1645 SRF-TF 2.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1645 - - mtr:MTR_4g032620 239.195