Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1643 ATGGATTATTCGTGTGGAGGAAAGATTGGTGGAAGTGATATTCAAAGAGGTGGGCCATGTGGTGCGTGCAAGTTTTTGAGAAGAAAGTGTGTAAAAGGTTGTATATTTGCACCATATTTTGATTCAGACCAAGGAACGGTTCATTTTGCAGCGGTTCATAAAGTGTTTGGTGCTAGTAATGCCTCTAAGCTACTCATGCGTATTCCAGTTCATAAACGTCTTGATGCTGTTGTTACTCTTTGCTATGAAGCTCTTGCTAGGGCTAGAGACCCCGTTTATGGATGTGTTGCTCACATCTTTGCACTTCAACAACAGGTTATGAGCTTGCAGGCAGAGTTAACCTATGCTCAAGCCACTCTTGCGACAATGCAGCGCCTCCCAATCTCACTAGCTCCATCTCTTCCAAACCCTCAAAGGTCTTCACCAAGTTTTCACTATTTCTCAGATCATTTGGGAACAAATGCAGACATGCAAAGTGACTCTAACATGTCCATGAACTTTGATCCTCATCAACCACTTTCAACATCATTGGACTTGAGCAATTTCTTCAATCAATCAGATCAACAACTTGATGATGATGAACTCCAAGCTTTGGCTCGAGAATTTGTCTCCAGGTACTTGCCTGGAGTAAGATTCCAGCCATCTAATTCTCACTAA 657 0.4231 MDYSCGGKIGGSDIQRGGPCGACKFLRRKCVKGCIFAPYFDSDQGTVHFAAVHKVFGASNASKLLMRIPVHKRLDAVVTLCYEALARARDPVYGCVAHIFALQQQVMSLQAELTYAQATLATMQRLPISLAPSLPNPQRSSPSFHYFSDHLGTNADMQSDSNMSMNFDPHQPLSTSLDLSNFFNQSDQQLDDDELQALAREFVSRYLPGVRFQPSNSH* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1643 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 16 209 - -
Mal5g1643 218 Pfam Lateral organ boundaries (LOB) domain 19 117 IPR004883 -
Mal5g1643 218 PANTHER LOB DOMAIN CONTAINING PROTEIN 16 209 - -
Mal5g1643 218 ProSiteProfiles LOB domain profile. 18 120 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1643 Mal-Chr5 32278386 32284836 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1643 9 216 AS2 family AT4G00210 52.679 6.91e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal5g1643 LOB 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1643 - - gmx:100791377 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2572 3 98098601 98102747 Mal5g1643 5 32278386 32284836 PCT