Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1642 ATGACTAGAAAAAAGGTGAAACTTGCCTTCATTGTCAATGATGCCGCAAGGAAAGCAACATACAAGAAAAGGAAGAAGGGTCTATTGAAGAAGATCGATGAACTAACCACCCTTTGTGGAATCGAAGCTTGTGCTATAATTTACGGTCCTTATGAACCACAACCTGAAATTTGGCCATCCCCTTGGGGAGTCCAAAAGGTGCTCTCGAAATTCAGGACAATGCCTGAAATGGAACAGAGCAAGAAAATGATGAATCAAGAGACTTTCTTGCAACAAAGGGTGATGAAGGCTAAAGAGCAAGTCAAGAAGATACGTAGAGAGAATAAGGAGAAAGAGATTACTCTTCTAATGTTTCAATGTCTTAATGCAGGGAAAATTGTGCACAACAATATGTCAATGGTTGATGTGAATGATCTTGCTTGGTTGATTGACAAGAATTTGAAGGACATTGATAGAAGGTTGGAAGCAAGGGATAATAATGGTCAAATTGAAGGTGGAATTCAAATCACTACTACTCAAACTCCAAGTCAAGTCCAATTCCAAATGCCGCCGCCGCCACCACCACCACCATCATCAGTACCCAAGAATGAAGAAATGGCGATGATGGGTCATGGACATGCTGGAATGTCTATGAATTATGGTGATATGATGCAAAGACATTTATTTATGGACTTGATGATGAATGGTAATGGGGATGAGACAATTCCATTTGGTTATCCTCATGATGCCAATCTTCAAAATGGATTTTGGCCTAATCTACTTCCTTGA 768 0.3997 MTRKKVKLAFIVNDAARKATYKKRKKGLLKKIDELTTLCGIEACAIIYGPYEPQPEIWPSPWGVQKVLSKFRTMPEMEQSKKMMNQETFLQQRVMKAKEQVKKIRRENKEKEITLLMFQCLNAGKIVHNNMSMVDVNDLAWLIDKNLKDIDRRLEARDNNGQIEGGIQITTTQTPSQVQFQMPPPPPPPPSSVPKNEEMAMMGHGHAGMSMNYGDMMQRHLFMDLMMNGNGDETIPFGYPHDANLQNGFWPNLLP* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1642 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 220 - -
Mal5g1642 255 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mal5g1642 255 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Mal5g1642 255 MobiDBLite consensus disorder prediction 175 198 - -
Mal5g1642 255 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 220 - -
Mal5g1642 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g1642 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g1642 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g1642 255 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal5g1642 255 Coils Coil 87 114 - -
Mal5g1642 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal5g1642 255 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mal5g1642 255 MobiDBLite consensus disorder prediction 179 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1642 Mal-Chr5 32235039 32235806 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1642 1 161 Type I MADS-box Gene Family AT5G48670 57.764 3.00e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g1642 SRF-TF 3.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1642 - - gmx:100813231 263.077