LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g1584	ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATAGAGAACAAAATAAACAGGCAGGTAACTTTCTCAAAAAGAAGAAATGGTTTACTCAAGAAAGCTTATGAACTGTCTGTTCTCTGTGATGCTGAAATTGCTCTTATCATTTTCTCTAGCCGTGGTAAACTCTATGAATTTGGAAGTGTTGGAACTACCAAAACTATTGAGCGATATCAACGGTGCTCATTTAATCCTCAACAAGATGACCACCAAATCGATTGTGACACACAGAGTTGGTACCAAGAGGTGTCTAAGCTGAAGGCAAAGTATGAATCTCTTCAAAGGACTCAGAGGCAGTTGCTTGGAGAAGATCTTGGACCTTTGAACATAAAGGAGCTGCAGAATCTTGAAAAACAGCTTGAAGGTGCCTTAGCACAAGCTAGGCAAAGAAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGCAAAAGGGAACGCCATCTAGGAGACATGAACAAGCAACTAAGACTCAAGCTTGAAGGAGAGGGATTTAATCTTAAAGCTATGGAGAGCTTGTGGAGCTCTAATTCAGTTGCTGGAAATAGCAACTTTACCTTTCATCCACCTCAAACCAACCCTATGACTATGAGCATGGATATCCAAGCAGAACCCTTCTTGCAAATAGGATACCAACAGTATGTTCAAGCTGAGGCATCTAATGTTTCCAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATCCTTTGA	750	0.408	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQQDDHQIDCDTQSWYQEVSKLKAKYESLQRTQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKRERHLGDMNKQLRLKLEGEGFNLKAMESLWSSNSVAGNSNFTFHPPQTNPMTMSMDIQAEPFLQIGYQQYVQAEASNVSKSMACETNFMQGWIL*	250

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g1584	249	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Mal5g1584	249	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Mal5g1584	249	Pfam	K-box region	86	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mal5g1584	249	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Mal5g1584	249	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mal5g1584	249	Gene3D	-	13	92	IPR036879	GO:0003677\|GO:0046983
	Mal5g1584	249	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mal5g1584	249	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	1	235	-	-
	Mal5g1584	249	CDD	MADS_MEF2_like	2	73	IPR033896	GO:0000977\|GO:0045944
	Mal5g1584	249	Coils	Coil	121	144	-	-
	Mal5g1584	249	PANTHER	MADS BOX PROTEIN	1	235	-	-
	Mal5g1584	249	Coils	Coil	94	114	-	-
	Mal5g1584	249	SUPERFAMILY	SRF-like	2	80	IPR036879	GO:0003677\|GO:0046983
	Mal5g1584	249	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mal5g1584	249	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mal5g1584	249	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g1584	Mal-Chr5	30894976	30901196	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g1584	1	249	MADS-box Gene Family	AT2G45650	66.148	2.29e-113	324

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Mal5g1584		K-box	1.1e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g1584	K09264		-	gmx:100820061	422.165

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g1584	5	30894976	30901196	Mal5g1584	5	30894976	30901196	ECH
	Mal5g1584	5	30894976	30901196	Mal3g2606	3	98741149	98748890	ECH
	Mal5g3946	5	108975631	109001401	Mal5g1584	5	30894976	30901196	ECH