Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1583 ATGAGGAACACGCTCGGAGCAGTCAGCTCCGACCAACAGGCAATGCTCCCCCTCCCCGCGAGGGGCACGCTCGGAGATTGTGATAATGGTCATATTGTTTGCTCTATCTGCTGTCCTATACTTTCGAACAAGTGTCACAAGTGCTCATTGTCCATCAGCTCTAAACGTTGTAAAGCCATTGAGGATCTATTGCAATCTATCTTAATGCCATGTCCGAATGCAAAATATGGTTGCAAGGTGACAAATTGGTACACTAGACAGATGAATCATGAAGAAGAATGCATCCATAAGCCATGTTATTGTCCCTTTTCAGGTTGTGACTTTGTTGAATCATCAAAAGTGTTGTCTATGCATTTCAGTCATAAACACAGGGATTCTCAAATCAAATTCTCTTTTCGTCAATCCTTCATTATATCCTTGAAGAAAATGATGACAAACTATTTATTCTCAATAAATAGTACTACGCTTTTAGGAAATGTAGTCAATCTTTGCTGCTTTGGTCCGGACGCTTCTGAGTCTGAGTATAGTTACGATATATTGGCTACGTCTCAGATATGCAAAGTGAAATTACACTCTTTTGCCAAGAATGTCCAACGGGTTACTTTAGAATATCTTTCACCAGAGTTCCTTGTGATTCCATTTGGTTCTTCTGAATCTCTTAAGCTAGAGATTTGCATATCTTGCGCAACCTCCAAGATGCAAATCTTCGTAAAGGGCCTAGATGGACAGACGATGTCCTTTCACGTTAAGAGTTCGGACAGGGTACTCAAAGTAAAAGAGATGATTCATGACAAGACAGGAGGTATCCCGGTGCAAGACCAACGTTTGATCTATAGCTCTCATCAACTCGATGGCAACCTAACGTTTGCCAATTACAACATCAGACATGAATCAACCCTCCACCTTGTCCTCCGCCTCCTTGGAGACTAG 930 0.4183 MRNTLGAVSSDQQAMLPLPARGTLGDCDNGHIVCSICCPILSNKCHKCSLSISSKRCKAIEDLLQSILMPCPNAKYGCKVTNWYTRQMNHEEECIHKPCYCPFSGCDFVESSKVLSMHFSHKHRDSQIKFSFRQSFIISLKKMMTNYLFSINSTTLLGNVVNLCCFGPDASESEYSYDILATSQICKVKLHSFAKNVQRVTLEYLSPEFLVIPFGSSESLKLEICISCATSKMQIFVKGLDGQTMSFHVKSSDRVLKVKEMIHDKTGGIPVQDQRLIYSSHQLDGNLTFANYNIRHESTLHLVLRLLGD* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1583 309 Gene3D - 227 309 - -
Mal5g1583 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 119 IPR013083 -
Mal5g1583 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 27 229 IPR044286 -
Mal5g1583 309 PRINTS Ubiquitin signature 243 263 IPR019956 -
Mal5g1583 309 PRINTS Ubiquitin signature 286 307 IPR019956 -
Mal5g1583 309 Pfam Ubiquitin family 235 306 IPR000626 GO:0005515
Mal5g1583 309 ProSiteProfiles Ubiquitin domain profile. 233 309 IPR000626 GO:0005515
Mal5g1583 309 SUPERFAMILY TRAF domain-like 66 227 - -
Mal5g1583 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 27 229 - -
Mal5g1583 309 Pfam Seven in absentia protein family 56 138 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal5g1583 309 ProSiteProfiles Zinc finger SIAH-type profile. 66 124 IPR013010 GO:0008270
Mal5g1583 309 SMART ubq_7 233 305 IPR000626 GO:0005515
Mal5g1583 309 SUPERFAMILY Ubiquitin-like 228 308 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1583 Mal-Chr5 30862025 30865533 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1583 233 308 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 56.579 3.05e-20 83.2