Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1582 ATGGTGAGAGGAAAGACTCAAATGAAGCGTATAGAGAACGCAACAAGTAGGCAAGTAACTTTCTCAAAGAGAAGAAATGGTTTGTTGAAGAAAGCATTTGAGTTATCAGTGCTTTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTCTATGAATTTGCAAGCTCAAGCATTCTAGAAACAATTGAGCGATACCGGAGTCATACCAGGATTAATAATGCTCCAACAACAGCTGAAACAATTGAAAATACTCAGCTTCTGAAGGAAGAAGCAGAAAACATGATGAAGAAGATTGACCTTCTTGAGACTTCAAAACGCAAACTCTTAGGAGAAGGTTTACGGTCTTGTTCCATTGATGAACTACAAAAGATAGAACAACAGTTGGAGAGGAGTATAGGCAAAATTCGAGCAAAAAAGACTCAGGTTTTCAAGGAACAAATTGATCAGCTAAAAGAAAAGGAAAAAGCCCTAGCTGCTGAAAATGTCAGGCTCTCTGAGAAGTATGATAATTATTCATCACAGGCAGCAAAAAAGGATGGGAGAGAAAATATACCTATGCTTGAACCTTATGCAGATAAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGATCAAGGCGCATTTCTCCGAAGTTCTAG 675 0.3881 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSILETIERYRSHTRINNAPTTAETIENTQLLKEEAENMMKKIDLLETSKRKLLGEGLRSCSIDELQKIEQQLERSIGKIRAKKTQVFKEQIDQLKEKEKALAAENVRLSEKYDNYSSQAAKKDGRENIPMLEPYADKSSPSSDVETELFIGLPETRSRRISPKF* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1582 224 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Mal5g1582 224 PANTHER MADS-BOX PROTEIN SOC1 1 214 - -
Mal5g1582 224 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal5g1582 224 Coils Coil 88 115 - -
Mal5g1582 224 MobiDBLite consensus disorder prediction 176 190 - -
Mal5g1582 224 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal5g1582 224 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal5g1582 224 Coils Coil 122 171 - -
Mal5g1582 224 MobiDBLite consensus disorder prediction 175 206 - -
Mal5g1582 224 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal5g1582 224 SUPERFAMILY SRF-like 3 85 IPR036879 GO:0003677|GO:0046983
Mal5g1582 224 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Mal5g1582 224 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal5g1582 224 PANTHER MADS BOX PROTEIN 1 214 - -
Mal5g1582 224 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal5g1582 224 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal5g1582 224 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal5g1582 224 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1582 Mal-Chr5 30822581 30849747 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1582 1 159 MADS-box Gene Family AT2G45660 73.292 4.47e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal5g1582 K-box 6.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1582 - - mtr:MTR_8g033220 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1582 5 30822581 30849747 Mal5g1582 5 30822581 30849747 ECH
Mal3g2608 3 98758060 98774642 Mal5g1582 5 30822581 30849747 PCT