LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g1580	ATGGTGAGAGGAAAGACTCAAATGAAGCGCATAGAGAACGCAACAAGTAGGCAAGTAACTTTCTCAAAGAGAAGAAATGGTTTGTTGAAGAAAGCATTTGAGTTATCAGTGCTTTGTGATGCTGAAGTTGCTCTTATTGTTTTCTCACCAAGAGGAAGGCTTTATGAATTTGCAAGCTCTAGCGTTTCAGAAACAATTGAACGATACCGCAGTCATGCCAGGATTAATAATACTCCAACAACATCTGAATCAGTTGAAAATACTCAGCATTTGAAGGAAGAAGCAGAAAACATGATGAAGAAGATTGACATTCTTGAGACTTCAAAACGGAAACTCTTGGGAGAAGGTTTAGGGTCTTGTTCCATTGATGAGCTACAAAAGTTAGAACAACAGTTGGAGAGGAGTATAAGCAAAATTCGAGCAAAAAAGACTCAAGTTTTCAGGAAGCAAATCGATCAGCTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGTCAGGCTCTCTGAGAAGTATGGTAACTATTCATCACAGGCGGCAAAAAAGGATAAGAGAGAAAATATACCTATGGTTGAACCTTATGCAGATCAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGATCAAGGCGCATTTCTCCAATGGTCTAG	675	0.3881	MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSVSETIERYRSHARINNTPTTSESVENTQHLKEEAENMMKKIDILETSKRKLLGEGLGSCSIDELQKLEQQLERSISKIRAKKTQVFRKQIDQLKEKEKALVAENVRLSEKYGNYSSQAAKKDKRENIPMVEPYADQSSPSSDVETELFIGLPETRSRRISPMV*	225

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g1580	224	Pfam	K-box region	86	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mal5g1580	224	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Mal5g1580	224	MobiDBLite	consensus disorder prediction	177	206	-	-
	Mal5g1580	224	PANTHER	MADS-BOX PROTEIN SOC1	1	214	-	-
	Mal5g1580	224	Coils	Coil	88	108	-	-
	Mal5g1580	224	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Mal5g1580	224	Coils	Coil	151	171	-	-
	Mal5g1580	224	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Mal5g1580	224	PANTHER	MADS BOX PROTEIN	1	214	-	-
	Mal5g1580	224	SUPERFAMILY	SRF-like	3	87	IPR036879	GO:0003677\|GO:0046983
	Mal5g1580	224	CDD	MADS_MEF2_like	3	72	IPR033896	GO:0000977\|GO:0045944
	Mal5g1580	224	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mal5g1580	224	Coils	Coil	122	145	-	-
	Mal5g1580	224	Gene3D	-	14	110	IPR036879	GO:0003677\|GO:0046983
	Mal5g1580	224	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mal5g1580	224	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mal5g1580	224	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mal5g1580	224	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g1580	Mal-Chr5	30681198	30742872	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g1580	1	159	MADS-box Gene Family	AT2G45660	72.671	1.06e-80	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Mal5g1580		K-box	4e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g1580	-		-	mtr:MTR_8g033220	390.193

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g1580	5	30681198	30742872	Mal5g1580	5	30681198	30742872	ECH