Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1525 ATGATGGGTGCAGGTAGCAATTTGGTTACAACAATTATTGGATTTGGATTGAGTGCAACTTTCATTGTATTTGTATGTACAAGAATAATTTGTGGAAGATTTAGAGAAAGGCATGTGGGATCACGTACTATATATGAGATGGAATCAAGACCAGATATTGAACGGCCAGAATATCATGGCAATGACCCTGAACCTGCATTTGTTGCTGCAATCCCCACTTTACACTTCAATCAAGAGGCCTTCAGTACCATTCAATGTACACAGTGTGTGATATGTTTGGGAGAGTACAAAGAAAAAGAAGTATTACGCATAATACCTTATTGTGGACACACTTTTCATCTTTCTTGCATTGATATGTGGTTAAGAAAACAATCCACGTGTCCTGTATGTCGTTTGACATTACATAATGTTTGTGAAGAAAAACATGTGAGACCTGTGACATTCACCATAAGACAATCTCTTGATGAGTCTTCTAATACTACTTCACAAGGGAATGAGAGACAAGTTGAAGTTAATGCAAGAGAAACACAATAG 534 0.3708 MMGAGSNLVTTIIGFGLSATFIVFVCTRIICGRFRERHVGSRTIYEMESRPDIERPEYHGNDPEPAFVAAIPTLHFNQEAFSTIQCTQCVICLGEYKEKEVLRIIPYCGHTFHLSCIDMWLRKQSTCPVCRLTLHNVCEEKHVRPVTFTIRQSLDESSNTTSQGNERQVEVNARETQ* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1525 177 MobiDBLite consensus disorder prediction 154 171 - -
Mal5g1525 177 SMART ring_2 89 130 IPR001841 -
Mal5g1525 177 SUPERFAMILY RING/U-box 88 137 - -
Mal5g1525 177 CDD RING-H2_PA-TM-RING 88 131 - -
Mal5g1525 177 PANTHER OS11G0150450 PROTEIN 1 167 - -
Mal5g1525 177 Pfam Ring finger domain 88 131 IPR001841 -
Mal5g1525 177 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Mal5g1525 177 MobiDBLite consensus disorder prediction 154 177 - -
Mal5g1525 177 PANTHER OS02G0676500 PROTEIN 1 167 - -
Mal5g1525 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1525 Mal-Chr5 29415194 29416916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1525 78 134 C3H Transcription Factor Family AT4G10160 54.386 1.51e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1525 - - cam:101509791 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1525 5 29415194 29416916 Mal5g1525 5 29415194 29416916 ECH