Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1521 ATGAGAAGATTCATTGGTGTGAGACAAAGGCCATCAGGTAGATGGGTAGCTGAGATCAAAGACTCATCTCAACATGTAAGATTATGGCTTGGAACCTATGACACACCAGAAGAAGCTGCTCGAGCTTACGACGAAGCTGCTCGAGCTTTGCGCGGCGAAAATGCTCGAACCAACTTTGCAGCAGAATCAACAGACAATACTACACCATGTAGTGATGATCAAGTTCAAGGGCTATTAGCATCACCACAGACAAATGAAGGAAAAAACAATAGTTTAACTTTTGCTTCATTGAAAGCAAAATTGAGCAAGAATCTTCAAAGTATTATGGCAAGAACAAGTGATCATCATAACAATAAATTTTCAAAGAGTAGAGTGAGTGATCATTTTACTTTTGCTAGCATATTCAACCGTAGGAATAATAATAATAATTACAACCAAATCTCTGCTTTGGATATGAAGAACATTGAGAAAGTTGTGCAACCTAGTATCATTGTTCCCTCTAATGATGGTGATCAACATCATAGTACTTATCCTTCTAGTGTTTCTGATTGTAGTTCTGAATGGTTTGGATTTCAGAATCATGGATTAGACTCTGATGGATCTGATATAGGAGAGATTAATAATAATGTTAATATTAATGTTGGTGATCAAGGTTTTTTGGAACAACTCATGGGGTGGATTGATGATAGTTCTGATATTTGTGAAGGTTCAAGTAGTAAGAGGTTTAAGGTATCTTCTTCTGTTCTTGTTCCTCCATCTTTCTCTGGATCTCCTTATGATTGTGGTTCACCTTATAGTGGTTATGCTTCTCCCTATAATAGTTGTGGATCCCCTTGTAATGGTTATGCCTCTCCTTATTATGGTGGCAAGAAGTAA 876 0.3721 MRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAAESTDNTTPCSDDQVQGLLASPQTNEGKNNSLTFASLKAKLSKNLQSIMARTSDHHNNKFSKSRVSDHFTFASIFNRRNNNNNYNQISALDMKNIEKVVQPSIIVPSNDGDQHHSTYPSSVSDCSSEWFGFQNHGLDSDGSDIGEINNNVNINVGDQGFLEQLMGWIDDSSDICEGSSSKRFKVSSSVLVPPSFSGSPYDCGSPYSGYASPYNSCGSPCNGYASPYYGGKK* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1521 291 CDD AP2 3 61 IPR001471 GO:0003700|GO:0006355
Mal5g1521 291 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 239 - -
Mal5g1521 291 Gene3D AP2/ERF domain 2 61 IPR036955 GO:0003700|GO:0006355
Mal5g1521 291 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 239 - -
Mal5g1521 291 Pfam AP2 domain 3 52 IPR001471 GO:0003700|GO:0006355
Mal5g1521 291 PRINTS Ethylene responsive element binding protein signature 4 15 IPR001471 GO:0003700|GO:0006355
Mal5g1521 291 PRINTS Ethylene responsive element binding protein signature 26 42 IPR001471 GO:0003700|GO:0006355
Mal5g1521 291 ProSiteProfiles AP2/ERF domain profile. 3 60 IPR001471 GO:0003700|GO:0006355
Mal5g1521 291 SUPERFAMILY DNA-binding domain 4 61 IPR016177 GO:0003677
Mal5g1521 291 SMART rav1_2 3 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1521 Mal-Chr5 29350022 29350897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1521 3 67 AP2-EREBP Transcription Factor Family AT5G19790 67.692 3.58e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g1521 AP2 1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1521 K09286 - gmx:100799444 329.717