Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1520 ATGAAGCCTATCTTTTGTGGAAACCTGGATTTTGATGCAAGACAATCTGATGTTGAGAGGCTTTTCAGAAAGTACGGGAAGATTGATAGAGTCGACTTGAAGTCTGGTTTTGCTTTTATCTACATGGAAGATGAACGGGATGCCGAGTATGCAATCAGAAGACTTGATCAAACAGAATTTGGTAGAAAGGGGCGCCGAATTCGTGTTGAGTGGACTAAGGCAGAACGTGACAACAGAAGGTCTGGTGGCGATTCAAAGAAATCTTCAACTAATACAAAACCATCAAAGACTTTGTTTATTATAAATTTTGATCCTGTTCACACCAGGACAAGGGATTTAGAGAGACACTTCGATCCCTATGGGAAAATATCAAATTTAAGGATCAGAAGGAATTTTGCTTTTATCCAGTTTGAAACTCAGGAGGAAGCCACTAAAGCTTTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTTATCACAGTGGAGTATGCTATAAGAGATGATGATGTCAAAAGGGATGGATACAGTCCTGATAGAAGAGGTCGCGGCTCCCCTGATGGTAGGTATGGTCGTGGCTCTCCTGATGGGAGGTATGGTCGTGGAAGATCCCCCAGTCCTTATCGAAGAGGTAGGGGTAGCCCTGATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCAAAGTATGAACGAGCTGAAAGCCCAATGAATGGGAGATACGATAGCCGATCACCCCCACCTCGTGGATCAAATCCATCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGAGATGAAAGCCCAATGAATAGGAGATATGATAGCCGATCTCCCCCGCCTCGTGATAGGTCGCGATCTTGA 885 0.4486 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPDRRGRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPMNGRYDSRSPPPRGSNPSSRPEPRGSPKYERDESPMNRRYDSRSPPPRDRSRS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1520 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Mal5g1520 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Mal5g1520 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Mal5g1520 294 PANTHER - 4 263 - -
Mal5g1520 294 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 263 - -
Mal5g1520 294 SUPERFAMILY RNA-binding domain, RBD 4 168 IPR035979 GO:0003676
Mal5g1520 294 MobiDBLite consensus disorder prediction 265 294 - -
Mal5g1520 294 MobiDBLite consensus disorder prediction 171 294 - -
Mal5g1520 294 MobiDBLite consensus disorder prediction 171 187 - -
Mal5g1520 294 Gene3D - 1 86 IPR012677 -
Mal5g1520 294 Gene3D - 87 175 IPR012677 -
Mal5g1520 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Mal5g1520 294 SMART rrm1_1 97 163 IPR000504 GO:0003723
Mal5g1520 294 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mal5g1520 294 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1520 Mal-Chr5 29303775 29308694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1520 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 23.497 2.65e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1520 K12893 - gmx:100797778 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1520 5 29303775 29308694 Mal5g1520 5 29303775 29308694 ECH