Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1488 ATGAGTTTTGGGGGTTTTGTAGAGAACAATTCTGGGGGTGGTGGTGTGAGAAATATTGGAGAAATTTCTTACAACAACAACGAAAGAATGCCATTTGGTTCTTTCTCACAACCTCGTCTTGTTACAACTCCAGCTTTGGCTAAATCAATGTTCAACTCATCTGGATTATCACTTGCACTTCAAACTAATATTGATGGACAAGAAGATGTGAATGGATCAATGCATGGAAATTTTGAGCAAAATGGTTTGAGAAGAAGTAGAGAAGAAGAACAAAGTAGATCTGGTAGTGATAACTTGGATGGTGTTTCTGGTGATGAACAAGATGCTGATGACAAACCTCCTAGGAAAAAGAGATACCACCGACACACTCCTCAACAGATTCAAGAGCTTGAAGCTTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAGCAAAGATTGGAACTTAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACTCAATTGGAAAGGCATGAGAACAATTTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAATATGTCTATAAGAGATGCAATGAGGAATCCTATATGTTCAAATTGTGGTGGTCCAGCTATGATCGGCGAGATTTCACTCGAGGAACAACATCTTCGAATCGATAATGCAAGGTTGAAAGATGAGCTAGACAGAGTCTGTGCACTTGCCGGAAAGTTTTTAGGCCGTCCGATTTCTTCGTTACCAAACTCAAGCTTAGAGCTTGGTGTTGGAGGAAACAATAACAATGGTTTTAATGTGATGAGTAATGTGCCTTCAACATTGCCTGATTTTAGTGCTGGAATGTCTAATAACTCTTTAGCAGTTGTGTCTCCTTCAACTAGATCAACACCTTTGGTGAGTGGATTTGATAGATCGGTCGAAAGGTCTATGTTTCTTGAGCTTGCTTTGGCTGCTATGGATGAGTTGGTTAAGATGGCACAAACTAGTGAGCCTCTTTGGATTAGGAGTATAGAAGGTGGAAGAGAAATTTTGAACCAAGAGGAATATATGAGGACATTCACTCCTTGCATTGGTTTGAAACCTGATGGTTTTGTCTCTGAGGCCTCTAGAGAGACTGGTATGGTCATCATCAATAGCTTAGCCCTTGTTGAGACTCTTATGGACTCGAATCGATGGATAGAGATGTTTCCTGGTATCATTGCAAGAACCTCAACTACTGAAGTGGTATCTAATGGAATAAATGGAACAAGAAATGGTGCACTTCAACTAATGCAAGCTGAGCTTCATGTGCTATCGCCTTTGGTTCCGGTTCGCGAGGTAAATTTCCTTCGGTTTTGCAAGCAGCATGCAGAAGGGGTTTGGGCTGTGGTTGATGTGTCTATAGATACCATCAGAGAGAATTCTGGAGCTACAAGTTTTGTGAACTGTAGGAAGCTTCCTTCTGGTTGTGTTGTGCATGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATTCAGAATATGAGGAAAATCAAGTCCACCAGCTGTATAGACCCTTGTTGAGCTCAGGTATGGGGTTTGGTGCGTCCCGTTGGGTTGCGACCCTACAACGCCAGTGCGAGTGCCTTGCCATACTAATGTCCTCCGCTGCTCCCTCTCGAGACCACTCTGCAATAACAGCAGGAGGAAGGAGAAGCATGCTGAAGCTAGCGCAGCGAATGACAAACAACTTCTGCGCAGGCGTATGTGCCTCGACGGTCCACAAATGGAACAAACTTAACCCTGGAAATGTGGACGAAGACGTGAGAGTAATGACACGGAAGAGCGTCGATGATCCTGGTGAGCCACCGGGGATTGTGTTGAGTGCAGCCACGTCGGTGTGGCTCCCGGTTTCGCCTCAAAGACTGTTTGATTTTCTGCGTGATGAGAGGCTCCGTAGTGAATGGGATATTCTATCTAATGGTGGTCCTATGCAAGAGATGGCTCATATTGCTAAAGGACAGGATCATGGCAACTGTGTTTCTCTTCTCCGTGCTAGTGCGATGAATTCGAACCAGAGTAGCATGCTGATACTACAAGAAACATGCATCGACGAGGCGGGGTCACTTGTAGTCTACGCGCCGGTCGATATTCCAGCCATGCATGTTGTCATGAACGGCGGCGATTCAGCTTACGTGGCATTACTACCTTCCGGCTTCGCCATTGTCCCCGATGGTCCCGGGTCACGTGGGCTGGAGAACGGTGACACAACCGCAAACGGAGGCGGCGAGCCGCATGTTAGTGGGTCTCTTTTGACCGTGGCGTTTCAAATCCTTGTGAATAGTCTTCCTACGGCAAAACTCACCGTTGAGTCAGTTGAAACGGTTAACAATCTCATTTCTTGCACCGTTCAGAAAATCAAAGCTGCACTACACTGTGAAAGCTAA 2430 0.449 MSFGGFVENNSGGGGVRNIGEISYNNNERMPFGSFSQPRLVTTPALAKSMFNSSGLSLALQTNIDGQEDVNGSMHGNFEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENNLLRQENDKLRAENMSIRDAMRNPICSNCGGPAMIGEISLEEQHLRIDNARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNNGFNVMSNVPSTLPDFSAGMSNNSLAVVSPSTRSTPLVSGFDRSVERSMFLELALAAMDELVKMAQTSEPLWIRSIEGGREILNQEEYMRTFTPCIGLKPDGFVSEASRETGMVIINSLALVETLMDSNRWIEMFPGIIARTSTTEVVSNGINGTRNGALQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRENSGATSFVNCRKLPSGCVVHDMPNGYSKVTWVEHSEYEENQVHQLYRPLLSSGMGFGASRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGLENGDTTANGGGEPHVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1488 809 CDD START_ArGLABRA2_like 314 542 - -
Mal5g1488 809 CDD homeodomain 115 173 IPR001356 GO:0003677
Mal5g1488 809 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 806 IPR042160 -
Mal5g1488 809 SMART HOX_1 114 177 IPR001356 GO:0003677
Mal5g1488 809 Pfam Homeodomain 116 171 IPR001356 GO:0003677
Mal5g1488 809 SUPERFAMILY Homeodomain-like 101 173 IPR009057 -
Mal5g1488 809 MobiDBLite consensus disorder prediction 81 95 - -
Mal5g1488 809 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Mal5g1488 809 Pfam START domain 319 543 IPR002913 GO:0008289
Mal5g1488 809 MobiDBLite consensus disorder prediction 67 123 - -
Mal5g1488 809 SUPERFAMILY Bet v1-like 571 802 - -
Mal5g1488 809 Coils Coil 167 199 - -
Mal5g1488 809 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 64 806 - -
Mal5g1488 809 Gene3D - 102 189 - -
Mal5g1488 809 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
Mal5g1488 809 ProSiteProfiles START domain profile. 310 546 IPR002913 GO:0008289
Mal5g1488 809 SUPERFAMILY Bet v1-like 312 543 - -
Mal5g1488 809 SMART START_1 319 543 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1488 Mal-Chr5 28469450 28475631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1488 1 809 Homeobox Transcription Factor Family AT3G61150 65.700 0.0 1051
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal5g1488 START 2.7e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1488 K09338 - gmx:100811873 1344.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1488 5 28469450 28475631 Mal5g1488 5 28469450 28475631 ECH
Mal5g1488 5 28469450 28475631 Mal3g2625 3 99073881 99080857 ECH