Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1446 ATGGGTGCAATTAGTATTCGCGCTTTTGGCGATTTTAATTCTCCAGAGGTCGACAAAGAGGCTCTTAATTCAACCAACATTTCTCTATACTCCATTACCGATATCAAACCAAAAATAAATACCGATGGAAAGGACGATACCTATAGGCATTTTCTTATGGATTTTAATAATACGGTTTCCAGATGGCCTCCACCCCTACACGTCTTTGTGATATTTGGTAATGAAGACTTCCCTAGAAATGGCATATTGCACCGGTTAAGAATGTGCAACTACAATATCTTGCTTGCATGTCCAGGAAGGGCTCATTTTTCTCTCTGCCATGCAGCAACTATAGTGTGGGAGTGGTCTTCGATGCTCAAGGGGGAAGACCTTACAGGAAAACATTTCAACTATCCTCCTGATGGTCCGTTTAATTCGTGCTATGGAAACTCAAATGTGCTTCTTGAAAACCCCTTCTCAGTTGCTGAGTTGCACACATCTTCACAAAATGTGGAGATCTACAAACCTTCCTTGGACATAAAGTTAGGTAAAAATATTGTGAAAATATTGTGTTCGCACCCTAATGGGATAACCATGGGAGATCTTCGTGCAGAGTTGACAAAGTGTGATCTGCCTTTGGGTAAACACTTCTATGGTCGTAAAAAGTTTTCCAACTTTCTAGTATCTATACCACAATTACAACTCGAGTATTTAGGAGGAGGTAATTTTTGGGTGCGTTTGGTCCCATCCACAACATCTGTTGTTAAGAATAAGCAGATGGATGGTGCCGCAACTCAAAAGGTACAAAATGAGAGTAAAAATATGGATAGAAGTGCAGACGAGATTCCCAGAATATCCTCATCAGGTGTTAGCAGCGAGGGTGATGATTTAAAATCATTCCAATCTAATGATGACATTGTTAAATCTGATGATGTATGTCCTGAAATTTTAGAAAAAATTAACCCTTCACAGAATCCATATACTTGTAATGATTGCACCATGTTGAAAAACAATGATTTTTCAAATCTTGAACCCGAAAAAGACAATAAACATGAGAGTCCAACTAGAAAGGAGGTTGATGAAGCTTGTCATAGTCCATTTACATCAACTTTCTTTAGTAGGATTAGAAGTTGGTGGAGAAAGCTTAAGTTTTTTTTTAAGGATTCAGAGTTATCTGAAATAGTCGTAGACCTGAGTGATAGTCATCCTCTGCAGCCTCATTGGGATACCTTTAGGGTATCAGTATGGTGGGACTTTGACAGCTGTGGCGTCCCTTCCAACTTTAGCTTTTTGAATGTAGCACCTTCAATTATGGGAGTTCTTAGAGCTAACGGAATAAAGGGCCCTATACATATTGACGCTTATGGCGACGTTTCTCAACTTTCAGAGATCAAACAAGAAGCACTTTTCTTATCTGGCGTTAATCTCCACCACATTCCAGGTGGAACGAACAAGAACAAATGCTTTATGGATTGGCTTTCACGAAATCCCCCACGCGGACACTTCTTTTTGATATCTGGTGATAAAGACTTTGACTTCTCCAGCACATTGCATCGGACCTGGTTGAGGAAGAATGGCAACTTCTTGCTTGCATGTCCAGGAAAGGCTCATGGTTATATTTGCAAAGTAGCAACTATAGTGTGGCAGTGGTCTTCAATTCTCAAGGGGAAATATCTTACTGGAAAATATATCAAGCCTTTTCCTGATTGGTATATTAAGGTGTGGGTGCAGGTGCCTCTTGAATATCCTCCCTGGTGGTATAGAAATTCAAAGGCGCCTCATGAAAACTCCTTCTCAGTTGTTGAGGAGCCCACATATTCACAAAATGCAAATATCCACGAACCTTCCTCGTACGTAAAGTTATTGGAAGTTCAAGAGTCGGTTTCTAGGCAGGTTAGGAAGGTATTGAGTTCATACCCGAATGGGATCTCCATTGGAGATCTTAATTTACAGTTGAGAGTGATTTTCGCTGGAGGCTTATGTGGATGTAAAAAGTTTCCCGAAATTCTAGCATCTATACCACATGTACAACTCTTGTATATAGGAGATGATAATTTTTGTGTACGTTTGATCCCATCAACAACATCTAATGTTAAGAAGAAGCAGTGGGCTATTAAGAATGAGCAGAGGGATGTCAATCATTCCGAAATGTCTGTGTTGTTTACTACTAGTTCCTTTTGGAATGATGTGGAATCTTTTGTTTTCACGTCTAGAGGATCACGTCTTCTTTCCCGGTCAAGAAGCAGGGAGGATCTAGCTCATAGATTACAAAAGCATGGATCCCTGTTTTTTATGTCTCTCACTGAAAATAAAATCCTTCAATTGGTAGAATTGTTGATAGCGGAGAAGAAATGGTTGGAGGAAAGCCCCTCACAAGCATTTCCTTTTAGGCTAACTAAATCAGTTCATAAGAGCTAA 2397 0.3984 MGAISIRAFGDFNSPEVDKEALNSTNISLYSITDIKPKINTDGKDDTYRHFLMDFNNTVSRWPPPLHVFVIFGNEDFPRNGILHRLRMCNYNILLACPGRAHFSLCHAATIVWEWSSMLKGEDLTGKHFNYPPDGPFNSCYGNSNVLLENPFSVAELHTSSQNVEIYKPSLDIKLGKNIVKILCSHPNGITMGDLRAELTKCDLPLGKHFYGRKKFSNFLVSIPQLQLEYLGGGNFWVRLVPSTTSVVKNKQMDGAATQKVQNESKNMDRSADEIPRISSSGVSSEGDDLKSFQSNDDIVKSDDVCPEILEKINPSQNPYTCNDCTMLKNNDFSNLEPEKDNKHESPTRKEVDEACHSPFTSTFFSRIRSWWRKLKFFFKDSELSEIVVDLSDSHPLQPHWDTFRVSVWWDFDSCGVPSNFSFLNVAPSIMGVLRANGIKGPIHIDAYGDVSQLSEIKQEALFLSGVNLHHIPGGTNKNKCFMDWLSRNPPRGHFFLISGDKDFDFSSTLHRTWLRKNGNFLLACPGKAHGYICKVATIVWQWSSILKGKYLTGKYIKPFPDWYIKVWVQVPLEYPPWWYRNSKAPHENSFSVVEEPTYSQNANIHEPSSYVKLLEVQESVSRQVRKVLSSYPNGISIGDLNLQLRVIFAGGLCGCKKFPEILASIPHVQLLYIGDDNFCVRLIPSTTSNVKKKQWAIKNEQRDVNHSEMSVLFTTSSFWNDVESFVFTSRGSRLLSRSRSREDLAHRLQKHGSLFFMSLTENKILQLVELLIAEKKWLEESPSQAFPFRLTKSVHKS* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1446 798 Pfam OST-HTH/LOTUS domain 176 237 IPR025605 -
Mal5g1446 798 Pfam OST-HTH/LOTUS domain 619 670 IPR025605 -
Mal5g1446 798 MobiDBLite consensus disorder prediction 251 295 - -
Mal5g1446 798 PANTHER EMB|CAB71880.1 699 798 - -
Mal5g1446 798 CDD PIN_limkain_b1_N_like 405 526 - -
Mal5g1446 798 Pfam NYN domain 405 509 IPR021139 GO:0004540
Mal5g1446 798 PANTHER LIMKAIN B LKAP 699 798 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal5g1446 798 PANTHER LIMKAIN B LKAP 2 372 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal5g1446 798 PANTHER LIMKAIN B LKAP 392 706 IPR024768 GO:0005777|GO:0010468|GO:1903231
Mal5g1446 798 PANTHER EMB|CAB71880.1 2 372 - -
Mal5g1446 798 PANTHER EMB|CAB71880.1 392 706 - -
Mal5g1446 798 CDD PIN_limkain_b1_N_like 2 98 - -
Mal5g1446 798 ProSiteProfiles OST-type HTH domain profile. 171 242 IPR025605 -
Mal5g1446 798 MobiDBLite consensus disorder prediction 251 265 - -
Mal5g1446 798 Gene3D - 174 241 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1446 Mal-Chr5 27341651 27346405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1446 405 549 C2H2 Transcription Factor Family AT5G61190 35.762 3.94e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1446 - - mtr:MTR_7g077430 1041.57