Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1406 ATGTCTTTTACTGGAACTCTTGATAAATGCAAGGCTTGTGACAAGACTGTTTATGTGGTTGATATAATGACTCTTGAAAATATACCATACCATAAAAGCTGCTTCAAATGTAGTCATTGCAAGGGAAATCTTACTATGAGTACATACTCCTCCATGGATGGAATTCTCTATTGCAAGGTACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTCGCAAAGTCTTCTGACAAACAAAGTGAGCTGAATAGGACTCCAAGTAGACTATCTTCCATGTTTAGTGGTACCCTGGACAAATGTGCGACTTGCTCTAAAACCGTCTATCCGTTGGAAAAGGTGACATTGGAAGGAGAGTGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACACTCAAACTATGCTGCTCTTGATGGTGTCCTATACTGCAGGGTCCATTTTGCTCAACTTTTCATGGAGAAAGGTAACTACAGTCATGTACTCCAATCTGCACACAAGAGGAATGGTTCTTCTTCTGAATCAGTTGATGTTATTGAAGAGCCTTCACAATCAGCAGAAGCACCTGAAGAGCATCCAGAAGAAACCTCTTGA 618 0.4126 MSFTGTLDKCKACDKTVYVVDIMTLENIPYHKSCFKCSHCKGNLTMSTYSSMDGILYCKVHFEQLFKESGNFSKNFAKSSDKQSELNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLQSAHKRNGSSSESVDVIEEPSQSAEAPEEHPEETS* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1406 205 Gene3D Cysteine Rich Protein 5 100 - -
Mal5g1406 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mal5g1406 205 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mal5g1406 205 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Mal5g1406 205 Pfam LIM domain 104 159 IPR001781 -
Mal5g1406 205 Pfam LIM domain 10 65 IPR001781 -
Mal5g1406 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Mal5g1406 205 MobiDBLite consensus disorder prediction 173 205 - -
Mal5g1406 205 MobiDBLite consensus disorder prediction 173 188 - -
Mal5g1406 205 PANTHER OS06G0237300 PROTEIN 1 205 IPR045268 GO:0051015
Mal5g1406 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Mal5g1406 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Mal5g1406 205 Gene3D Cysteine Rich Protein 101 168 - -
Mal5g1406 205 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 205 - -
Mal5g1406 205 SMART lim_4 9 61 IPR001781 -
Mal5g1406 205 SMART lim_4 103 155 IPR001781 -
Mal5g1406 205 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1406 Mal-Chr5 25080926 25082838 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mal5g1406 LIM 3.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1406 - K09377 gmx:100800234 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1406 5 25080926 25082838 Mal5g1406 5 25080926 25082838 ECH
Mal3g2667 3 99739398 99741900 Mal5g1406 5 25080926 25082838 PCT