Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1397 ATGGGAAGAACACCTTGTTGTGACAACAAAATGGGGTTGAAGAAAGGTCCATGGACTACTGAAGAAGATGAAGTTCTTGTTAATTATATCAAGAAAAATGGTGGTCATGGAAGTTGGCGTTCTCTTCCTAAGTTAGCAGGACTTCTTCGTTGTGGTAAGAGTTGCCGGCTAAGATGGACGAACTACCTGAGACCTGATATTAAACGCGGTCCCTTTACACCTGAGGAAGAAAAACTAGTCATACAACTTCATGCCATCCTTGGAAATAGGTGGGCTTCAATTGCATCTCAGCTACCAGGAAGAACAGACAATGAAATCAAGAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACTCATGAACCAATAGCCTCATCACATTACTACCCAATTTCCAAATCAAATTCATCTATCGCCACGCGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACACATCTTTATTCAACAATAACAACATTCCTTCTGTTGCAAGCAACAAATCTGATTCTGACTATTTCCTTAAGATATGGAACTCTGAAGTTGGACAATCTTTTCGCATTGGTCGCAAATCAGACGACGAGGACGATGATGATAAAACTAAGTGCCAAAGTTCAATGTCTCAAGAGGGGTCATCTTGTAATAACAACAACAAATGTGGATCAGTTTCTGTTACTACTACTACAACAAGCAATCTGAAGGAAGATTTTGAATGGAAAAACTACAAGTCATTTGATGTAGGTTATGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCATTGCAGCTCTTGTTGGATTTTCCTTCTAACAATGATATGAGTTTCTTAGAATGA 897 0.3935 MGRTPCCDNKMGLKKGPWTTEEDEVLVNYIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWASIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSHYYPISKSNSSIATRHMAQWESARLEAEARLSKDTSLFNNNNIPSVASNKSDSDYFLKIWNSEVGQSFRIGRKSDDEDDDDKTKCQSSMSQEGSSCNNNNKCGSVSVTTTTTSNLKEDFEWKNYKSFDVGYDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1397 298 Gene3D - 12 69 - -
Mal5g1397 298 MobiDBLite consensus disorder prediction 221 237 - -
Mal5g1397 298 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Mal5g1397 298 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Mal5g1397 298 CDD SANT 17 63 IPR001005 -
Mal5g1397 298 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
Mal5g1397 298 SMART sant 14 65 IPR001005 -
Mal5g1397 298 SMART sant 68 116 IPR001005 -
Mal5g1397 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Mal5g1397 298 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Mal5g1397 298 Gene3D - 71 118 - -
Mal5g1397 298 MobiDBLite consensus disorder prediction 205 220 - -
Mal5g1397 298 MobiDBLite consensus disorder prediction 205 237 - -
Mal5g1397 298 CDD SANT 71 114 IPR001005 -
Mal5g1397 298 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mal5g1397 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mal5g1397 298 PANTHER PROTEIN ODORANT1-LIKE 1 297 - -
Mal5g1397 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1397 Mal-Chr5 24997039 25000027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1397 1 298 MYB Transcription Factor Family AT3G61250 61.794 6.24e-122 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g1397 Myb_DNA-binding 6.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1397 K09422 - gmx:100816569 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g2669 3 99747971 99751440 Mal5g1397 5 24997039 25000027 PCT