Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1396 ATGAACAATAACAACAGAGCAAGATTTCCACCGCCTGGAATCGGTCCCGGCCGTGGTGGTTCGAATTCGAATCTGAATTCGAACCAAAACCCGAACCAGAGTTTGAATTCGAACGCGAATTTGAACAATCAGTATCAGCATAGGGCACCTTATTATCAGAATAACCAACACCAGCATCAGAACCAGCAGCAGAATCAGCAGCATCAATATTATGCTCAGAGACAAATGGTGCAGCACCAACACCAGCAACAACAGCAACAGTGGCTGAGAAGGGCGCAATTGGGAGGTTCGGAATCCAATGCTGTTGATGAGGTTGAGAAGACCGTGCAATCCGAAGCCTCTGATGCGAGTTCTCAAGACTGGAAGGCAAGGCTAAAGATTCCACCAGCTGATACACGCTTTAGGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAACGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGACCTTCCCCCATCCAGGAAGAAAGCATTCCAATTGCTCTTACTGGCAGTGACATTCTTGCTAGGGCTAAGAATGGAACTGGCAAAACAGCTGCATTTTGCATTCCGGCATTGGAAAAAATTGATCAGGATAACAATGTTATTCAAGTTGTTATCTTGGTCCCAACAAGAGAATTGGCTTTGCAAACATCACAAGTTTGTAAAGAGCTTGGAAAGCACTTGAAAATCCAAGTAATGGTAACAACAGGTGGTACTAGTCTGAAAGATGACATAATGCGTTTATATCAACCGGTCCATCTACTGGTTGGAACCCCAGGAAGGATATTAGATCTTACGAAGAAGGGTGTTTGCGTTCTTAAAGATTGCTCCATGCTTGTCATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAGCCATCCATTCAGGAGCTGATTCACTTTCTACCTGCAAATCGTCAAATCCTGATGTTTTCAGCAACGTATCCTGTTACTGTGAAGGACTTCAAAGATAGGTTTCTTCATAAACCATTTGTCATTAACCTTATGGATGAGCTCACTTTGAAGGGTATCACTCAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCTTGAATACTCTCTTTTCTAAGCTGCAAATAAACCAGTCAATTATCTTCTGCAACTCTGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACTGAACTTGGCTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAATAGAGTATTTCATGATTTCCGCAATGGTGCATGCCGAAATCTTGTCTGTACTGATCTTTTTACTAGAGGAATAGACATTCAAGCAGTTAATGTTGTTATTAACTTTGATTTTCCCAAGAACGCTGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGCCACCTTGGTTTAGCGGTGAACTTGATCACTTATGAGGACCGCTTTAATTTATATAGGATTGAACAAGAACTCGCCACTGAAATCAAGCAAATTCCGCCACACATTGATCAAGCATTTTATTGCCGGTGA 1560 0.4212 MNNNNRARFPPPGIGPGRGGSNSNLNSNQNPNQSLNSNANLNNQYQHRAPYYQNNQHQHQNQQQNQQHQYYAQRQMVQHQHQQQQQQWLRRAQLGGSESNAVDEVEKTVQSEASDASSQDWKARLKIPPADTRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSMLVMDEADKLLSPEFQPSIQELIHFLPANRQILMFSATYPVTVKDFKDRFLHKPFVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELATEIKQIPPHIDQAFYCR* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1396 519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 346 IPR014001 -
Mal5g1396 519 MobiDBLite consensus disorder prediction 19 39 - -
Mal5g1396 519 CDD SF2_C_DEAD 357 486 - -
Mal5g1396 519 Pfam Helicase conserved C-terminal domain 371 477 IPR001650 -
Mal5g1396 519 CDD DEADc_DDX6 147 347 - -
Mal5g1396 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 499 IPR027417 -
Mal5g1396 519 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Mal5g1396 519 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 5 519 - -
Mal5g1396 519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 516 IPR001650 -
Mal5g1396 519 SMART helicmild6 396 477 IPR001650 -
Mal5g1396 519 MobiDBLite consensus disorder prediction 55 94 - -
Mal5g1396 519 MobiDBLite consensus disorder prediction 55 121 - -
Mal5g1396 519 Gene3D - 351 518 IPR027417 -
Mal5g1396 519 SMART ultradead3 164 360 IPR014001 -
Mal5g1396 519 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 5 519 - -
Mal5g1396 519 Pfam DEAD/DEAH box helicase 170 334 IPR011545 GO:0003676|GO:0005524
Mal5g1396 519 Gene3D - 129 350 IPR027417 -
Mal5g1396 519 MobiDBLite consensus disorder prediction 103 118 - -
Mal5g1396 519 MobiDBLite consensus disorder prediction 1 39 - -
Mal5g1396 519 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 292 300 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1396 Mal-Chr5 24979265 24989829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1396 145 512 Eukaryotic Initiation Factors Gene Family AT3G19760 38.649 3.19e-95 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1396 K12614 - fve:101307921 837.795