Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1334 ATGCAGTCCGGTGGTGGTGGGCCTGGCCGGCCGGCGGGGCGGGCGTCGACACCGTCGGCAGCTGCTTCGCCGTCTTCGTCTTCTTCGGCATCGCAGTTAGGGTTTGAAGCTATGCAGCAACAACATCAGCAGCAGCATCAGCAGCAGCAGATAGGTTCTAGGCAGTCATTTCAGCAGCAACTGCTTAGAAAACCTGAAGGGAATGAAGCATTTTTAGCTTTTCAAGCAGGGCGTCAAGGTGTATTTGGTAGTAACAATTTCCAACAACCTAATGCTGTGCAGCTGCCGCAGCAGTCTGGAAAATTCGTTAATTTAGCTCAACACGGTTCGAACCAAGATGGCCAGCTCAGAAGTCAAGGTAGCGAGCAGCAGCAAATGCTAAACCCTGTCCACCAAGCATACCTTCAATATGCTTTCCAGGCTGCGCAACAAAAGCAACCTGCTTTAGGAAATCATTCACAACAGCAGACTAAGATGGGAATGTTAAACCCTGCATCTGTAAAAGATCAGGAAATGCGTATGGGAAACCTGAAAATGCAACAGGTTATGTCAATGCAGGCTGTAAATCAAGCTCAAGGGTCATCTTCTAGGAACTCATCTGAACACAATGCCCGTGGAGACAAGCAGATGGAGCAAGGACAGCAGATAAGACCTATCCAAGCACCAGAAGCACAGCAGGGCAACATTCAAAATGTTATGAACACCCAGATTGCAGTAGCTCATCAATTGCAGATGATGCAGGCATGGGCACGTGAAAATAATATTGATTTATCACATCCTACGAATGCAAATTTAATGGCAAAGCTCCTTCCAGTGATGCAGTCGAGGATGGTCTTACCACCAAAGGTCAGTGAGAGCAACATTGCTCCGCAGTCATCACCTGCCCCTGTTTCAAATCAGCAGGTTAATTCTCCAGCTGTTGCAAGTGAGAGCTCAGCACATGCTAATTCATCAAGCGAAGTGTCTGGGCAGTCAGGTTCTTCAAAAGCCCGGCATACGGTTCCCCCCATCCATCTTGGCTCAACAACCAATGCTGGTCACTCCAGTGACTTGGCCATGCAGCAATTCAATGTTCATGGTAGAGAGTCTCAAGGTCCTCCGAGGCAACAAGTAAAAGCTGGAAATGGAAGGCCCTCTATGAATTCTCAGCAATCTTCTGCAGTCATGAATTTGGGTGCAGCAGACCATCCTTCAAATGCAAAAGGTTCTTCTTCTGGTGCTGAACCTCCTCAAATGAGGCAGTTAAACCAATCTTCTACTCAGGCTGGAGGTCCAACAAAAGAAGGGGGTTCGGGAAATAATGCTAAATCTCAAGGGGCACCAGCTCAGATGCCTGAGAGACAAACTGCATTTACCAGACAACAGCTACATGTTCTTAAAGCACAGATACTAGCATTTAGGCGGATAAAGAAAGGAGAAGGAGCTCTGCCTCCAGAACTTCTTCAAGCTATCACTCCACCGCCTCTTGAGATGCAGGAAATACAACCAAACCATCCTGCGGGAGGACAAAATCAAGTCCAATCTGCTGGAAATTTTGTCTCAGAACAACCACGGCATGTTGAGGCCAATGCCAAAGAATCACAGCCTATCCCTTCTGTTAATGGACACAGTTCTGTAAAGCAAGAATCCTTTTCAAGAGATGAGAAATCTGCTCCACCACCAGTTCATATTCAAGCTGTTATGCCATCTATTTCAAAGGAAATTGCTTCGACATCATTTGCAGGAAAGGAAGAGCAGAAAACAATTGGATCCTCTTTTAAGCCAAAGCAGGACAGTGAACATGGAAATAACAGTACTCCGGTTAGAAATGAGTCGGCATTAGATAGGGGAAAGGCTATTGCATCACAGGCCTCTGTATCTGACACGATGCAAATTACAAAAGCTCCACAAGCAAACACAGTTTCTCAGCCAAAGGATGTGGGACCAGCCAGAAAATATCACGGACCCCTGTTTGATTTTCCTTTCTTCACTAGGAAACATGACTCTTTTGGGTCATCAATGATGGTAAACAACAGCAATAATTTATCACTGGCATATGATGTCAAAGATCTTCTTTTTGAGGAAGGCACGGAAGTACTTAACAAGAAGCGGACAGAAAATTTAAAGAAGATTGAAGGTCTACTGGCTGTGAATTTGGAGAGAAAACGAATTCGGCCTGATCTTGTGTTGAGACTGCAAATTGAAGAAAAAAAGCTTCGTCTTTTAGATGTTCAGGCACGTTTGAGGGAAGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCAGATAGGCCATATCGTAAGTTTGTTAGGCTGTGTGAACGTCAGCGTGTCGAACTTGTTAGACAAGTGCAGGCATCTCAGAGAGCTGCAAGGGAGAAGCAACTCAAATCTATATTTCTATGGCGTAAGAAACTTCTTGAGGCACACTGGGCAATTCGTGATGCCCGTACTGCCCGCAACAGGGGGGTGGGTAAATATCATGAGAGGATGTTGAGGGAATTCTCAAAACATAAAGATGACGACAGAAGCAAAAGGTTAGAAGCCTTAAAAAACAATGATGTTGACAGATATAGGGAGATGTTGCTGGAGCAGCAGACTAGCATTCCGGGTGATGCTGCAGAGAGATATACCGTTCTTTCATCTTTCTTAAGCCAGACTGAAGAGTATCTACATAAATTAGGAAGCAAGATAACAGCTGCCAAAAATCAACAGGAAGTAGAGGAAGCAGCAAAAGCTGCTGCGGATGCTGCACGATTGCAGGGTCTTTCTGAAGAAGAAGTCAGAGCTGCTGCTGCTTGTGCCGGAGAGGAAGTGATGATTAGGAATCGTTTTCTGGAGATGAATGCTCCTAGAGACAGTTCATCCGTCAACAAGTATTACAACCTCGCACATGCGGTGAATGAAATAGTCATAAGACAACCATCCCTATTACGAGCTGGAACATTGAGAGATTATCAGCTTGTTGGATTGCAATGGATGCTTTCCTTGTACAACAACAAATTAAATGGAATTTTGGCTGATGAGATGGGTCTTGGCAAAACCGTACAGGTTATGGCATTGATTGCATACTTGATGGAATTCAAAGGAAACTATGGCCCACATCTCATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGAGTGAGTTATATAAGTGGTTACCATCTGTGTCATGCATCTTTTATGCTGGAGGGAAGGATTTTCGAACAAAATTATTTCATCAGGTTTCTGCTCTGAAATTTAATGTCTTGGTGACTACTTATGAGTTCATCATGTATGACCGGTCAAAACTTTCAAAAATTGATTGGAAGTATATCGTGATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTTTAGCACGTGATCTTGATAGGTATCGTTGTCAAAGACGTCTGCTTTTGACAGGAACACCGTTGCAGAATGATTTGAAGGAACTCTGGTCACTTTTAAATTTACTTCTTCCTGAGGTTTTTGATAATAAGAAAGCCTTTCATGATTGGTTCTCAAAACCATTTCAAAAGGAAGGTGCTACTCAAAATGCAGAGGATGATTGGCTTGAGACAGAGAAGAAAGTCATCACAATCCATCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTACCACCAAAGGACTCCATAGTTTTACGATGTAAAATGTCATGTGTCCAGAGTGCTATTTATGATTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCCGAGGATGAGGAACGTAAGATTCAGAGGAATCCTAACTACCAGGTGAAGCGATATAAAACTTTAAACAACAGATGCATGGAGCTGCGGAAAACTTGCAATCATCCGTTGCTTAATTACCCATTCTTCAGTGACTTATCTAAAGAATTCATTGTAAAATCTTGTGGAAAATTGTGGATCCTGGATAGGATCCTCATAAAACTTCAACGAACCGGACATCGTGTTCTACTTTTCAGTACCATGACAAAACTTCTTGACATCTTGGAAGAATACCTGCAGTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAGTTTGGAAGACCGTGAATCAGCTATAAATGACTTCAATGGCCCTGATTCAGACTGTTTCATTTTCTTGCTTAGCATTCGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTTATTTATGATCCTGATCCAAACCCTAAAAATGAAGAGCAGGCTGTTGCCAGAGCTCATCGCATTGGACAGAAAAGACCGGTCAAGGTTATCTACATGGAAGCAGTTGTCGACAAAATCCCTAGTCATCAGAAGGAAGAGGAACTGAGAGGTGGAGGAGGCACTGTCGATCTGGAAGATGAACTTGCAGGCAAGGATCGCTACATAGGATCCATTGAGGGCCTTATAAGGAACAATATTCAGCAATATAAGATAGATATGGCTGATGAGGTAATTAATGCTGGACGTTTCGATCAAAGAACAACGCATGAAGAAAGGCGTTTGACTTTGGAGACATTGTTGCATGATGATGAGAGATATCAAGAAACTGTCCATGATGTTCCATCACTGCAGGAGGTAAATCGCATGATTGCTAGAAGTGAAGAGGAAGTTGAACTGTTTGATCAAATGGATGATGAATTGGATTGGATTGACGAGATGACACGTTATGATCACGTGCCTAAATGGATCCGTGCCAATACAAAAGAAGTGAATGCTGCTATTGCTGCTTTATCAAAAAGACCATTAAAGAAAACTTTATTGGGTGGTAGTGTTGGCGTGGATTCGAGTGAACTTGGTTCAGAAAGAAAAAGAGGACGACCCAAAAAGCATACTAGTTATAAAGAGCTGGATGATGAAGATTTGGAATATTCTGAAGCAAGCTCTGAAGAAAGAAATGGATCTGCAAATGAAGAAGGGGAAATAGGAGATTTCGAAGATGATGGGTATAGTGGAGCTGATGGAGCACAGCCCATTGCTAAAGTTCAGCTGGAAGATGGTGTTCTTTGTGATGGTGGATATGAATTTCCTCCATCTTCAGAAATTGCCAGAAATAATCAGGTGGTTCAAGAAGCGGGTTCCTCTGGATCGTCTGCAGACAGTCAAAAATTGACACAGATTGTATCACCATCAATTTCCTCTCAGAAATTTGGTTCCCTGTCAGCATTAGATGCCCGGCCAGGTTCCATTTCAAAAAGGATGGGAGATGACTTAGAAGAAGGTGAAATTGCAGTATCTGTTGATTCTCACATGGAACATCAACAGTCTGGAAGTTGGATTCATGATCGTGACGAAGGTGAGGATGAGCAAGTTTTGCAGAAACCAAAGATCAAACGCAAACGTAGTATTCGTGTTCGACCCCGTCATGCCACTGAAAAACCTGAGGAAAAGTCTGGTAGCGAAATGACACCTCGATTGTCAGTTCAAGCAGACCGTAAATATCAAGCACAGCTGAGGACTGACCTAGAATCAAAATCACATGTAGAGTCCAATGCCAGCAGGAATGATCAGAATTCTTCATTAAAAAATAAGCGTACTTTACCTTCAAGGAGGGTTGCTAATACATCCAAATTACATGGCTCACCAAAGCCTACTCGTTTGAATAGCATTTCTGCTCCTTCAGAGGATGGTGGTGAACATTCTAGAGAAAGCTGGGAAGGGAAGCCTATCAATTCAAGTGGATCTTCTGCTCATGGCTCTAGGATGACAGAAATCATCCAGAGAAGGTGCAAAAATGTCATTAGCAAGCTCCAAAGGAGGATAAACAAGGAAGGCCATCAAATTGTACCTCTGCTGACAGATTTGTGGAAGAGGATGGAGAATTCTGGGTACAGTGGTGGATCTGGGAATAATCTTTTGGATTTACGAAAGATTGATCAACGGATTGATAAATTGGAGTATAATGGAGCAACAGATCTTGTATTTGACGTCCAGTTCATGTTAAAGAGCGCGATGCATTATTATGGATTTTCCCTTGAGGTACGAACTGAAGCTAGGAAGGTTCATGATCTCTTTTTCGATATATTAAAAATTGCTTTTCCCGATACTGACTTCCGAGAAGCAAAAAGTGCACTCTCTTTCACTGGTCCAATCTCTGCCACCACCACGGTATCGTCTCCAAGGCAAGTGGCTGTTGGCCAAGGCAAGAGGAACAGGCTGATAAATGAGGTGGAACCCGATTCACACCCTTCACAGAGGCAGCTACAACGTGGATCAGCTTCTAGCGGCGAAAACAGCAGGATTAGAGTTCGTGTGCCACCAAAGGAATCAAGATCCGGATATGGTAGCGGGAGCAGCATTCGACAGCAACCTCAGCAGCAGGATGATTCTCCTCCACTACTCACTCATCCAGGTGAACTGGTTGTATGCAAGAAAAGAAGAAATGAGAGGGAGAAACCATTGGCGAAGCCTAGGACTGGTCCTGTTTCGCCATCTATGAGAAGTCCTGGGGCAGGTTCAGTGCCTAAGGATGTTAGAGTAACTCAACAGGCTCAAGAGTGGGTTGGCCAACCATCTTCTCAACAACCAAATGGGTCAGTTGGGTGGGCCAATCCTGTAAAGAGACTAAGAACAGATTCTGGTAAGAGGAGACCAAGTCATATGTAA 6606 0.4364 MQSGGGGPGRPAGRASTPSAAASPSSSSSASQLGFEAMQQQHQQQHQQQQIGSRQSFQQQLLRKPEGNEAFLAFQAGRQGVFGSNNFQQPNAVQLPQQSGKFVNLAQHGSNQDGQLRSQGSEQQQMLNPVHQAYLQYAFQAAQQKQPALGNHSQQQTKMGMLNPASVKDQEMRMGNLKMQQVMSMQAVNQAQGSSSRNSSEHNARGDKQMEQGQQIRPIQAPEAQQGNIQNVMNTQIAVAHQLQMMQAWARENNIDLSHPTNANLMAKLLPVMQSRMVLPPKVSESNIAPQSSPAPVSNQQVNSPAVASESSAHANSSSEVSGQSGSSKARHTVPPIHLGSTTNAGHSSDLAMQQFNVHGRESQGPPRQQVKAGNGRPSMNSQQSSAVMNLGAADHPSNAKGSSSGAEPPQMRQLNQSSTQAGGPTKEGGSGNNAKSQGAPAQMPERQTAFTRQQLHVLKAQILAFRRIKKGEGALPPELLQAITPPPLEMQEIQPNHPAGGQNQVQSAGNFVSEQPRHVEANAKESQPIPSVNGHSSVKQESFSRDEKSAPPPVHIQAVMPSISKEIASTSFAGKEEQKTIGSSFKPKQDSEHGNNSTPVRNESALDRGKAIASQASVSDTMQITKAPQANTVSQPKDVGPARKYHGPLFDFPFFTRKHDSFGSSMMVNNSNNLSLAYDVKDLLFEEGTEVLNKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDVQARLREEIDQQQQEIMAMPDRPYRKFVRLCERQRVELVRQVQASQRAAREKQLKSIFLWRKKLLEAHWAIRDARTARNRGVGKYHERMLREFSKHKDDDRSKRLEALKNNDVDRYREMLLEQQTSIPGDAAERYTVLSSFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAADAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVNEIVIRQPSLLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKSELYKWLPSVSCIFYAGGKDFRTKLFHQVSALKFNVLVTTYEFIMYDRSKLSKIDWKYIVIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFHDWFSKPFQKEGATQNAEDDWLETEKKVITIHRLHQILEPFMLRRRVEDVEGSLPPKDSIVLRCKMSCVQSAIYDWVKSTGTLRLDPEDEERKIQRNPNYQVKRYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAINDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKRPVKVIYMEAVVDKIPSHQKEEELRGGGGTVDLEDELAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDDERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDDELDWIDEMTRYDHVPKWIRANTKEVNAAIAALSKRPLKKTLLGGSVGVDSSELGSERKRGRPKKHTSYKELDDEDLEYSEASSEERNGSANEEGEIGDFEDDGYSGADGAQPIAKVQLEDGVLCDGGYEFPPSSEIARNNQVVQEAGSSGSSADSQKLTQIVSPSISSQKFGSLSALDARPGSISKRMGDDLEEGEIAVSVDSHMEHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSIRVRPRHATEKPEEKSGSEMTPRLSVQADRKYQAQLRTDLESKSHVESNASRNDQNSSLKNKRTLPSRRVANTSKLHGSPKPTRLNSISAPSEDGGEHSRESWEGKPINSSGSSAHGSRMTEIIQRRCKNVISKLQRRINKEGHQIVPLLTDLWKRMENSGYSGGSGNNLLDLRKIDQRIDKLEYNGATDLVFDVQFMLKSAMHYYGFSLEVRTEARKVHDLFFDILKIAFPDTDFREAKSALSFTGPISATTTVSSPRQVAVGQGKRNRLINEVEPDSHPSQRQLQRGSASSGENSRIRVRVPPKESRSGYGSGSSIRQQPQQQDDSPPLLTHPGELVVCKKRRNEREKPLAKPRTGPVSPSMRSPGAGSVPKDVRVTQQAQEWVGQPSSQQPNGSVGWANPVKRLRTDSGKRRPSHM* 2202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1334 2201 MobiDBLite consensus disorder prediction 572 606 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 1831 1875 - -
Mal5g1334 2201 CDD SF2_C_SNF 1296 1427 - -
Mal5g1334 2201 Coils Coil 727 751 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 186 215 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 2060 2079 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 186 200 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 2038 2201 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 1887 1901 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 360 447 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 285 347 - -
Mal5g1334 2201 Pfam QLQ 450 484 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mal5g1334 2201 SMART helicmild6 1333 1417 IPR001650 -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 2120 2136 - -
Mal5g1334 2201 PANTHER SNF2/RAD54 HELICASE FAMILY 30 2133 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 1816 1830 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 18 61 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 1750 1901 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 572 604 - -
Mal5g1334 2201 SMART bromo_6 1899 2014 IPR001487 GO:0005515
Mal5g1334 2201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 957 1206 IPR027417 -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 1 61 - -
Mal5g1334 2201 Pfam Helicase conserved C-terminal domain 1306 1417 IPR001650 -
Mal5g1334 2201 ProSiteProfiles QLQ domain profile. 450 486 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mal5g1334 2201 Gene3D - 1216 1426 IPR027417 -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 1589 1655 - -
Mal5g1334 2201 Gene3D - 968 1215 IPR038718 -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 2158 2181 - -
Mal5g1334 2201 Coils Coil 1524 1544 - -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 1598 1618 - -
Mal5g1334 2201 SMART ultradead3 973 1161 IPR014001 -
Mal5g1334 2201 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 989 1153 IPR014001 -
Mal5g1334 2201 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1307 1485 IPR001650 -
Mal5g1334 2201 MobiDBLite consensus disorder prediction 2092 2112 - -
Mal5g1334 2201 PANTHER ATP-DEPENDENT HELICASE BRM 30 2133 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Mal5g1334 2201 MobiDBLite consensus disorder prediction 1755 1776 - -
Mal5g1334 2201 Gene3D - 1898 2011 IPR036427 GO:0005515
Mal5g1334 2201 Pfam SNF2-related domain 980 1283 IPR000330 GO:0005524|GO:0140658
Mal5g1334 2201 SUPERFAMILY Bromodomain 1901 2012 IPR036427 GO:0005515
Mal5g1334 2201 MobiDBLite consensus disorder prediction 284 347 - -
Mal5g1334 2201 SMART QLQ_2 449 486 IPR014978 GO:0005524|GO:0005634|GO:0006355
Mal5g1334 2201 MobiDBLite consensus disorder prediction 523 554 - -
Mal5g1334 2201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1210 1548 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1334 Mal-Chr5 23418383 23428851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1334 998 1442 RAD5 or RAD16-like Gene Family AT1G02670 25.912 3.90e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal5g1334 SNF2_N 1.4e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1334 - - gmx:100807104 3372.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1334 5 23418383 23428851 Mal5g1334 5 23418383 23428851 ECH
Mal3g2729 3 100721404 100732169 Mal5g1334 5 23418383 23428851 PCT