LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g1319	ATGATTACCGCAATCCTCAGACGCGCTTCTTCCACTCTCTCACGCCGCACCATACCCGCCGCCGCCGAGATTCTCTTCTCCACCACCGCCGCCACCGAGCTCCGTCACCTCTCCGCCCTCACAGCTAGATCCTTCCACTCAAAACCACAAACCCTTCTATTTCGCGCTTCTTCCGCTTCTCGCGCTGGTTACGCCGCCGAAGCTTTTCCATTCGAAGAACCATCGAAATCGAATAGCGATGAGGGTCTTGAGATCGCGAAGCTTGGGATTTCTCAGGATATTGTCTCTGCTTTGGCTAATAAAGGAATCACTAAGCTTTTTCCCATTCAGAGGGCTGTGCTGGAACCTGCTATGCAAGGTCGTGATATGATTGGAAGAGCTAGAACTGGAACTGGAAAAACTCTTGCTTTTGGGATACCCATTATGGATAAGATCATTCAGTTTAATGCTAAACATGGGCGAGGAAGGGATCCACTGGCTTTGGTTTTGGCTCCAACTAGAGAACTTGCGAAGCAGGTTGAAAAGGAATTCTCTGAGGCTGCGCCTAATTTGGATACTATCTGTGTTTATGGGGGTACACCGATTTCTCAACAGATGAGGCAGCTTGATTATGGTGTTGATATAGCGGTTGGCACGCCTGGACGAATTATTGATCTTCTTACTAGAGGTGCTCTGAATTTGAAAGAAGTTCAGTTTGTTATTCTCGACGAAGCTGATCAGATGCTTCAAGTTGGGTTTCAGGAAGATGTGGAGAAGATCTTGGAGAGGTTGCCTGCACAGAGGCAAACTCTTATGTTCTCTGCAACAATGCCAAATTGGATAAAGCAGTTAACACGCAATTACCTGAAAAATCCTCTAACCATTGATCTTGTTGGAGATTCCGATCAGAAGCTGGCAGATGGAATTTCACTGTACTCAATTCTATCTGATGCGTATGTCAAAGCAGGAGTTCTTGTTCCTCTAATTAAAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGACGCTGATCGAATATCAAATGGCATGTCAAGAAGTATTCCATGTGAGGCATTGCATGGAGATATATCACAAGCTCAGAGAGAAAGGACCCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTCGATATACCTAATGTTGATCTTGTGATTCATTATGAGCTTCCCAATAATTCAGAGATATTTGTTCACCGATCTGGACGAACAGGTCGTGCTGGTAAGAAAGGTACGGCTATTACCATTTATACACAAGAGCAATCCAGGACTCTTAGGACTATTGAGCGTGATGTAGGCTGTAAATTTACAGAGTTAGCAAAGATTGCCGTTGATAGTGGATCACTTGGCGGATTTAGTGGTGGGGGTGGCGGATTTGGTGGTGGGGGTGGCAGATTTGGTGGTGGGGGTGGTGGGCGATCTGGTTCTTTTGGAGGTTCAAGGGGTGGATTTGGTGGCGATTCAGGTTTTAGCCGTGGCCGTTCTGGAGGCTATAGTAATTCAGGCGGGTTTTCTGATTCAAGATCTGGAGGGGGGTTTTCTGGCGGATCAAGCTCATATGGTGAAAATAGATATGGCGGATCAAGCTCTGGCCGTTTTGGCTCCTTTGGTTCAGGTGATTCAGGAAGTAGATCTGGTGGGTCCTCTGGTGGATTCAGCCAACAAGGTGGTTTTGGTGGATTTGGTGGTGGTTCAGATCGTTCCGGTGGTTTTGGAGATTTCGGGTCGGGTAAACCTAGCGCATTTGGCGATCGTCGTGGCAGGGATTAG	1812	0.4669	MITAILRRASSTLSRRTIPAAAEILFSTTAATELRHLSALTARSFHSKPQTLLFRASSASRAGYAAEAFPFEEPSKSNSDEGLEIAKLGISQDIVSALANKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELAKQVEKEFSEAAPNLDTICVYGGTPISQQMRQLDYGVDIAVGTPGRIIDLLTRGALNLKEVQFVILDEADQMLQVGFQEDVEKILERLPAQRQTLMFSATMPNWIKQLTRNYLKNPLTIDLVGDSDQKLADGISLYSILSDAYVKAGVLVPLIKEHAKGGKCIVFTQTKRDADRISNGMSRSIPCEALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAITIYTQEQSRTLRTIERDVGCKFTELAKIAVDSGSLGGFSGGGGGFGGGGGRFGGGGGGRSGSFGGSRGGFGGDSGFSRGRSGGYSNSGGFSDSRSGGGFSGGSSSYGENRYGGSSSGRFGSFGSGDSGSRSGGSSGGFSQQGGFGGFGGGSDRSGGFGDFGSGKPSAFGDRRGRD*	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g1319	603	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	83	111	IPR014014	GO:0003724
	Mal5g1319	603	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	35	509	-	-
	Mal5g1319	603	Gene3D	-	84	292	IPR027417	-
	Mal5g1319	603	CDD	SF2_C_DEAD	314	431	-	-
	Mal5g1319	603	SMART	ultradead3	102	305	IPR014001	-
	Mal5g1319	603	MobiDBLite	consensus disorder prediction	507	524	-	-
	Mal5g1319	603	Pfam	DEAD/DEAH box helicase	107	276	IPR011545	GO:0003676\|GO:0005524
	Mal5g1319	603	SMART	helicmild6	342	422	IPR001650	-
	Mal5g1319	603	MobiDBLite	consensus disorder prediction	478	524	-	-
	Mal5g1319	603	MobiDBLite	consensus disorder prediction	536	603	-	-
	Mal5g1319	603	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	114	288	IPR014001	-
	Mal5g1319	603	Gene3D	-	312	461	IPR027417	-
	Mal5g1319	603	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	157	443	IPR027417	-
	Mal5g1319	603	MobiDBLite	consensus disorder prediction	536	569	-	-
	Mal5g1319	603	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE	35	509	-	-
	Mal5g1319	603	Pfam	Helicase conserved C-terminal domain	318	422	IPR001650	-
	Mal5g1319	603	CDD	DEADc	94	289	-	-
	Mal5g1319	603	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	317	462	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g1319	Mal-Chr5	23115909	23120966	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g1319	73	453	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.987	5.74e-67	222

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g1319	-		-	gmx:100778436	738.799