Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1315 ATGGCTTTCTTTAGGAACTTCGTAAATGATACAGTCTCACATGGTGCCATGGAAGATAAAGGCCTAGGACAGGATGCGAATAATATCCATAGATCAGTAGGTAATGAGTGTACCGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACTTGGAGGCACAATATGAGAGTGATGGTGAGCCAGATGGTGCATGTAGATTGCAAAATGAGGGAACAGCTGATGATGGAGATGGTTTGAGAGAATCCAACTTACAGGCTGCTGGTAGTAAAGCATCTACGGTTGGAAGGTGGGGTTCAACATTTTGGAAGGACTGCCAACCTCCTCAGAATGGTTTTGAATCTGGTAAGGAATCAAAAAGTGGATCAGACTATAGAAATGCAGGGGGATCCGAAGAGAATTCATTGGATGGAGAAACAGGAAGGCTAGACTCGGAAGATGATGATGGACAAAAGGAGGCAGGTAAAGGCCGAAGAAGCCACTCTGATGTTCCTGCAGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAAAGTGACTCATTGCATTATAATGGGATTCACAAGTCCACTGGACGGAATTCATGGCCTCAAAAGAAGTCTACTTCTGTGAAAAAATCTGTCCGTAGGAAATCTAGGATTTCAGATGATGATGGTGATGGTGATGTTGATTACGAAGAGGAGGATGAAGTAGATGAAGATGATCCTGATGATGCAGATTTTGAGCCTGTCGAGAGTAGCCATACCTTAAAAAAGGACAAAGATTGGGATGGTGAAGGATCGGATGAAAATGATGACAGTGATGAAAGCCTAGATGTTTCTGATGATGACGAATCTTTCTATACTAAAAAAGGCAAGGGAAGGCAACAAGGTAATGTTAGAAAAAGTATAAAATCTACCAGAGATCGCAAAACATGTGTTGCATCTAACAGACAAAGAAGATTCAAATCATCTTTTGAAGACAATGAGTCTACAACAGAGGATTCTGACAGTGTTAGTGATGACGATTTTAAAAGCACAAGAAAGAGAAGTTTCAATGTCCGCAAGAATAACAGCCGCTTTTCTGTAACCACAAATTTTTCTACGCACAACAGTGACGTTCGGACTTCTAGTAGGGCGGTTAGGAAGATATCATATGTTGAAAGTGATGGAAGTGAAGAAGCTGATGATGGGAAGAAGAAAAAGTCTCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCTATTGAAAAGGTGCTTTGGCATCAGCTGAAGGGCACAGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCTGAATTTGATTGGAATGAAATTGAATTTTTGATAAAATGGAAGGGGCAATCTCATTTGCACTGTCAATGGAAGTCTTTTGCAGAGCTACAAAATCTCAGTGGCTTTAAGAAGGTTTTAAATTATACAAAGAAAATAATGGAGGACATCAGGTACCGGAGGGCAATCTCAAGGGAGGAGATTGAGGTCTATGATGTGAGTAAGGAGATGGATTTAGAAATTATCAGGCAGAACAGTCAGGTTGAAAGAATAATTGCAGATAGGATCAGTAAAGATAATTCTGGCGATGTTGTCCCAGAATACCTAGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAAAAGGACATTGATATCGCTTTTGCTCAACATTCAATCGATGAGTATAAGGCTCGAGAGGCTGCTATGTCAGTTCAAGGAAAGGTGGTGGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGAGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGCTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGGAAAACTGTTCAGTCAGTATCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTAGTTGTGCCGCTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTACTCGAGCAAGTCGAGAGGTTTGTCAACAGTATGAGTTTTATAATGACAAAAAGCCTGGCAAACCAATAAAATTCAATGCACTTTTGACTACATATGAAGTAATTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAAATGGAATTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGCGAGGCACAGTTGTATACATCACTTTTAGAATTTAGCACCAAGAATAAGTTGCTGATCACCGGTACTCCTTTACAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATCATAACAAGTTCAAGAGCAAGGATGAGTTTGTTCAAAACTATAAGAATCTGAGTTCTTTCCATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGACCACACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCTTTACCTCCCAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAACTTTCAAAATTTAAACAAAGGAGTTCGCGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTGAAAAAGTGTTGCAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCGGGGGGTAGTGACAACAGTAAACTCGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTTCTTGTTAGATTGCACGAAACCAAGCACCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTGGATATATTGGCACAGTATTTGTCACTTCGAGGGTTTCAATTTCAAAGACTTGATGGAAGCACAAAATCTGAGCTGCGACAGCAGGCTATGGAGCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTCTAGGCATAAACCTTGCCACGGCAGACACTGTCATCATATTTGATTCAGACTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGATGTTGTCAACATATATAGATTTGTGACAAGCAAAAGTGTTGAAGAAGATATTCTGGAGCGTGCTAAGAAGAAGATGGTTCTGGACCACTTGGTTATTCAAAAACTGAATGCAGAAGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTACTTTGATAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCAGAAGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGAATATAGATGAGATTCTGGAAAGAGCTGAGAAGGTTGAAGAGAAGACAGATGAAGATGAACAAGGGAACGAGTTATTAAGTGCATTTAAGGTTGCCAATTTTTGCAATGGTGAAGATGATGCAAGTTTCTGGAGTCGTTGGATAAAGCCCGATGCTGCATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCAAGAAATATTAAAAGCTATGCAGAGGCTGATCCATCTGAAAGGAGTAATAAAAGGAAAAAGAAGGAACCTGAACTACCTGAACGAGTTCAGAAACGCCGCAAAGCAGAGTATTCGGCTCCTGCAGTACCAATGGTTGATGGAGCTTCTGTCCAAGTTAGAAGTTGGTCATATGGGAATTTATCAAAAAGAGATGCACTCCGATTTTCTCGTGCAGTTATGAAATATGGGAATGAGAACCAAATCGACTTAATTGCTGCTGACGTTGGTGGTGCAGTTGCCGCAGCTCCACCTGAAGCACAGATTGAACTTTTCAATGCTCTAATTGATGGTTGTTCAGAAGCTGTGGAAATTGGAAATCTGGATATAAAGGGGCCTGCGCTAGATTTTTTTGGTGTCCCAGTGAAAGCAAATGATCTAGTTACCCGTGTCCAAGAGCTTCAACTCCTAGCAAAGCGCATTAGCCGGTACGAAGATCCCATTGCACAATTCCGCGTTTTATCATATCTCAAGCCTTCAAACTGGTCGAAAGGTTGTGGGTGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTACCATGGATTTGGTAATTGGGAAATGATTAGATTAGATGAAAGGCTTGGCCTCATGAAAAAAATAGCACCTGTAGAACTCCAAAACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTCTGGAACAAGAACTTGTTGTTCTTGGGGTAAAAAGTGCGAATAGCAGAGTTGCACGGAAGCCTTCCAAGAAAGAGAAAGAACATATGATGAATATCTCACTGTTGCGTGGACAGGAGAAGAAGAAAAAATTGGGTTCTGTTAATGTCCAAACGAGAAAGGATAGGTTTCAGAAACCCCGAAAGGTTGAGCCTATTGTAAAAGAAGAAGGTGAAATGTCTGATAATGAGGAAGTATATGAGCAGTTTAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGATTGCAGACAACTAGTGCTAATCTTCCAAAGGAAAAGGTTCTTTCAAAAATACGCAACTATTTACAACTTCTTGGGCGAAGGATTGATCAAATTGTGTTGGAAAATGAAGTGGAACCCTATAAGCAAGATAGAATGACTGTACGACTGTGGAAATATGTATCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAAGAACAAGAAGATGATGCTGGGGTTGGTCCATCTGCTTCATTTAACAGAAATGGAAACCCATTCCATCGCCACATGGAAAGGCAAAGAGGATTTAAAAATATGGCTAACTACCAAATGTCAGAACCGGATAATAATACAGGAAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGAGGATCATTTCCAGTGTCAGCCACCACCTCAAAGAGCCTCTAGTAATGGAATCCGGATTACCGATCCTAACTCACTTGGGATCCTTGGTGCTGGACCATCTGACAAACGGTTGGTCAGTGAGAAACCTTTTAGGACACAACCTGGTGGGTTTCCTTCAAGTCAAAGTTTTTCCTAA 5214 0.4064 MAFFRNFVNDTVSHGAMEDKGLGQDANNIHRSVGNECTDATSSEKEFDMNLEAQYESDGEPDGACRLQNEGTADDGDGLRESNLQAAGSKASTVGRWGSTFWKDCQPPQNGFESGKESKSGSDYRNAGGSEENSLDGETGRLDSEDDDGQKEAGKGRRSHSDVPAEEMLSDEYYEQDGEEQSDSLHYNGIHKSTGRNSWPQKKSTSVKKSVRRKSRISDDDGDGDVDYEEEDEVDEDDPDDADFEPVESSHTLKKDKDWDGEGSDENDDSDESLDVSDDDESFYTKKGKGRQQGNVRKSIKSTRDRKTCVASNRQRRFKSSFEDNESTTEDSDSVSDDDFKSTRKRSFNVRKNNSRFSVTTNFSTHNSDVRTSSRAVRKISYVESDGSEEADDGKKKKSQKEEIEEDDGDSIEKVLWHQLKGTAEDAQRNNRSTEPVLMSHLFDSEFDWNEIEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRRAISREEIEVYDVSKEMDLEIIRQNSQVERIIADRISKDNSGDVVPEYLVKWQGLSYAEVTWEKDIDIAFAQHSIDEYKAREAAMSVQGKVVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVILKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTSLLEFSTKNKLLITGTPLQNSVEELWALLHFLDHNKFKSKDEFVQNYKNLSSFHENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGGSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAQYLSLRGFQFQRLDGSTKSELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMNIDEILERAEKVEEKTDEDEQGNELLSAFKVANFCNGEDDASFWSRWIKPDAAFQAEEALAPRSARNIKSYAEADPSERSNKRKKKEPELPERVQKRRKAEYSAPAVPMVDGASVQVRSWSYGNLSKRDALRFSRAVMKYGNENQIDLIAADVGGAVAAAPPEAQIELFNALIDGCSEAVEIGNLDIKGPALDFFGVPVKANDLVTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEMIRLDERLGLMKKIAPVELQNHETFLPRAPNLRDRANALLEQELVVLGVKSANSRVARKPSKKEKEHMMNISLLRGQEKKKKLGSVNVQTRKDRFQKPRKVEPIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLENEVEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQEDDAGVGPSASFNRNGNPFHRHMERQRGFKNMANYQMSEPDNNTGKSEAWKRRRRAESEDHFQCQPPPQRASSNGIRITDPNSLGILGAGPSDKRLVSEKPFRTQPGGFPSSQSFS* 1738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1315 1737 MobiDBLite consensus disorder prediction 103 133 - -
Mal5g1315 1737 Pfam Chromo (CHRromatin Organisation MOdifier) domain 524 578 IPR023780 -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 1206 1234 - -
Mal5g1315 1737 Coils Coil 1075 1095 - -
Mal5g1315 1737 CDD SF2_C_SNF 921 1056 - -
Mal5g1315 1737 Pfam Domain of unknown function (DUF4208) 1524 1616 IPR025260 -
Mal5g1315 1737 ProSiteProfiles Chromo and chromo shadow domain profile. 523 587 IPR000953 -
Mal5g1315 1737 Gene3D - 525 577 - -
Mal5g1315 1737 Pfam Helicase conserved C-terminal domain 932 1045 IPR001650 -
Mal5g1315 1737 Gene3D - 606 845 IPR038718 -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 262 278 - -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 298 326 - -
Mal5g1315 1737 ProSiteProfiles Chromo and chromo shadow domain profile. 410 498 IPR000953 -
Mal5g1315 1737 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 627 799 IPR014001 -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 381 409 - -
Mal5g1315 1737 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 935 1086 IPR001650 -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 55 345 - -
Mal5g1315 1737 CDD CD2_tandem 521 577 - -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 382 409 - -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 1201 1235 - -
Mal5g1315 1737 SUPERFAMILY Chromo domain-like 502 578 IPR016197 -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 187 205 - -
Mal5g1315 1737 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 110 1676 - -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 222 244 - -
Mal5g1315 1737 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 110 1676 - -
Mal5g1315 1737 SUPERFAMILY Chromo domain-like 407 490 IPR016197 -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 245 261 - -
Mal5g1315 1737 Gene3D - 397 523 - -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 136 167 - -
Mal5g1315 1737 SMART chromo_7 408 491 IPR000953 -
Mal5g1315 1737 SMART chromo_7 521 580 IPR000953 -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 1666 1682 - -
Mal5g1315 1737 CDD CD1_tandem 408 488 - -
Mal5g1315 1737 Gene3D - 1342 1446 - -
Mal5g1315 1737 Gene3D - 846 1076 IPR027417 -
Mal5g1315 1737 SMART DUF4208_2 1512 1617 IPR025260 -
Mal5g1315 1737 SMART helicmild6 961 1045 IPR001650 -
Mal5g1315 1737 SMART ultradead3 611 807 IPR014001 -
Mal5g1315 1737 Coils Coil 1129 1149 - -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 1620 1642 - -
Mal5g1315 1737 Pfam SNF2-related domain 634 903 IPR000330 GO:0005524|GO:0140658
Mal5g1315 1737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 603 836 IPR027417 -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 1686 1701 - -
Mal5g1315 1737 MobiDBLite consensus disorder prediction 1655 1737 - -
Mal5g1315 1737 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 1121 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1315 Mal-Chr5 22984319 23008827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1315 637 1072 RAD5 or RAD16-like Gene Family AT1G02670 26.190 1.09e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mal5g1315 SNF2_N 1.4e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1315 K11367 - gmx:100792398 2922.49