Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1288 ATGGATGTGAAAGTGGCAAGGAGTAGTAGAACTGATCGAGTTATTGGGAAGACATGCGTTTATTGGCTCGCTGGGAAATGCAACAGAAATCCTTGTAGGTTTCTTCACAGTGTAACACCATCCACTGCTTCTTGTAATGCTGCCAACACTGGATATCATAATGCTGCAAGGAAACGGTATTCCCCTTATGGGTTTTCACACAGTGAAACAACATCGCACCCGTCTTCTTGCAGAGCTGATACTGGATATTATAATGCTGCAAAGAAGCCTCATTCATCCCATGTGTATGAGAAGTCCCTTCCCAAACATACTAAGGCGATTTTGAATACTAAGGCGGTTTTGAATACTAAGGCGATTTTGAATACTAAGGCGGTTTTGAATACTAAGGCAGTTTTGAATAAAAAGACCGGAGATGACAGAGATAGGACACAAGCTGTCGAGGCTTCCCTTCCAAAACACACCGAGACGGTCTTGAATAGAAAGACTGGTGATGACAAAGTAAGTACAGAAGTCGCCGAAGTTTCTCTTCCCAAACATAATACTGAGACGGTCTTGAGTAGAAAGATTGAAGAAGACAGAGATGGGACAAAAGTAGATGAGGTTTCTCAGAAGCCTTCACCGAGTATCTGCAAATACTGGGTGAATGACAGTTGTGTTCATGGTGCTCAGTGCCAGAATTTACATTCGTGGTTTTATGGTGATGGGTTTGGCACAATAGCAAAGCTTCAGGGACACGAGAAGCTTATCACTGGAATGACAATTCCAAATGGATCAGACAAGCTTTATTCTGGCAGCACTGATGGGACACTCCGGACATGGGACTGCCATACTGGTCAATGTATTGATGTGACGAATCTTGGCGTTGAAGTTACCTCTTTGATCAGCGAGGGCCCATGGATTTTTGTTGGTTTGCCAAACACTGTCAAGGCATGGCATATTCCGACTTCTTCACAGTTTACTCTTGATGGACCTAAGGGACAAGTACATGCCATGATTGTTGGCAATGATACACTCTTAGCCGGAGCAGAGGATGGTGTAATTTCTGCATGGAGAGGCAGCTCTGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTATGTGGCCACACTAAATCTGTTGTTTGCCTAGCTGTTGGAGGCTCCAAAATGCTGTACTCGGGATCCAAGGATCAAACAATTAAGGTTTGGGACCTTGACACATTTGAGTGTACAATGACAGTCAATGCACATACAGACGTAGTCACGTCCCTTATTTGTTGGGACAAGTACTTGTTATCTGGTTCATCTGATTGCACCATCAAGGTCTGGTTTCAAAACGAAGAGGGGAATTTGGAAGTAGCATATTCACATAATGTGGAAAGTGGTGTTGTTGCACTCTCTGGGATGACTGATCCAGAAATTAAGCCTATAATATTCTGCTCTGCCAGAGACAATGCAGTTCGCCTCTATGAACTCCCATCATTTGCAGAGAGGGGTAGATTGTTTGCAAAGCAAGAAGTTGGATTAGTTGATGTAGCTCCTGGCGGACTCTTCTTCACTGGAGATAGAACTGGTTTGCTGACAGTATGGAAATGGTTGGAAGAGTACAAGGTTGTGGCATCCTCTTGA 1608 0.4384 MDVKVARSSRTDRVIGKTCVYWLAGKCNRNPCRFLHSVTPSTASCNAANTGYHNAARKRYSPYGFSHSETTSHPSSCRADTGYYNAAKKPHSSHVYEKSLPKHTKAILNTKAVLNTKAILNTKAVLNTKAVLNKKTGDDRDRTQAVEASLPKHTETVLNRKTGDDKVSTEVAEVSLPKHNTETVLSRKIEEDRDGTKVDEVSQKPSPSICKYWVNDSCVHGAQCQNLHSWFYGDGFGTIAKLQGHEKLITGMTIPNGSDKLYSGSTDGTLRTWDCHTGQCIDVTNLGVEVTSLISEGPWIFVGLPNTVKAWHIPTSSQFTLDGPKGQVHAMIVGNDTLLAGAEDGVISAWRGSSEANSPFKLVASLCGHTKSVVCLAVGGSKMLYSGSKDQTIKVWDLDTFECTMTVNAHTDVVTSLICWDKYLLSGSSDCTIKVWFQNEEGNLEVAYSHNVESGVVALSGMTDPEIKPIIFCSARDNAVRLYELPSFAERGRLFAKQEVGLVDVAPGGLFFTGDRTGLLTVWKWLEEYKVVASS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1288 535 SMART c3hfinal6 13 38 IPR000571 GO:0046872
Mal5g1288 535 SMART c3hfinal6 204 230 IPR000571 GO:0046872
Mal5g1288 535 ProSitePatterns Trp-Asp (WD) repeats signature. 384 398 IPR019775 -
Mal5g1288 535 Pfam WD domain, G-beta repeat 402 436 IPR001680 GO:0005515
Mal5g1288 535 Pfam WD domain, G-beta repeat 361 397 IPR001680 GO:0005515
Mal5g1288 535 Pfam WD domain, G-beta repeat 239 274 IPR001680 GO:0005515
Mal5g1288 535 Gene3D - 233 358 IPR015943 GO:0005515
Mal5g1288 535 Gene3D - 359 534 IPR015943 GO:0005515
Mal5g1288 535 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Mal5g1288 535 PRINTS G protein beta WD-40 repeat signature 384 398 IPR020472 -
Mal5g1288 535 PRINTS G protein beta WD-40 repeat signature 424 438 IPR020472 -
Mal5g1288 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 242 283 IPR001680 GO:0005515
Mal5g1288 535 ProSiteProfiles Zinc finger C3H1-type profile. 18 39 IPR000571 GO:0046872
Mal5g1288 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 406 IPR001680 GO:0005515
Mal5g1288 535 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 8 535 - -
Mal5g1288 535 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 436 IPR001680 GO:0005515
Mal5g1288 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 242 274 - -
Mal5g1288 535 SUPERFAMILY WD40 repeat-like 239 530 IPR036322 GO:0005515
Mal5g1288 535 SMART WD40_4 487 524 IPR001680 GO:0005515
Mal5g1288 535 SMART WD40_4 314 351 IPR001680 GO:0005515
Mal5g1288 535 SMART WD40_4 359 397 IPR001680 GO:0005515
Mal5g1288 535 SMART WD40_4 235 274 IPR001680 GO:0005515
Mal5g1288 535 SMART WD40_4 400 437 IPR001680 GO:0005515
Mal5g1288 535 ProSiteProfiles Zinc finger C3H1-type profile. 204 231 IPR000571 GO:0046872
Mal5g1288 535 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 366 400 - -
Mal5g1288 535 PANTHER - 8 535 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1288 Mal-Chr5 22537903 22540272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1288 230 487 Eukaryotic Initiation Factors Gene Family AT2G46290 23.448 2.20e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1288 - - mtr:MTR_8g028700 888.641