Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1285 ATGGTATCTATAAACCCTAATCCATCTCCACAAGGCTTTTACTTCTTCGATCCTTCAACTATGGGTCTTCCCGGTGTCAACAATCTTCCACCACCGCCGCCACCATCCACTACCGCTGCCGGAGCATCTACCGTTTCCGAGGATCCGAATAAGAAGATCCGAAAACCTTATACGATTACTAAATCTAGAGAGAGTTGGACTGATCAGGAGCATGAAAAGTTTCTAGAAGCTCTTCAATTATTTGATCGTGATTGGAAGAAGATTGAAGCCTTCGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTCAAAGTCCAGAAGAGTGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCCAAAACTGCTCCTACTTCATCCCAAGTCATGGGGCCACTGCAATCTTCACCTGCTCTTGTTGATCCAGCATACATTTATAGCACAGATTCATCATCTGTGCTTGGAACACCGGTTACTAATCTGCCTTTATCATCTCTGAATTTTAATGCTACACCACCTGCCAGTGTGCCCCAAGTAACTACAGATGACACAGGATGGACTGGATCTGGACAAGCTGTTCCTCTTAATTGTTGCTATAGCAGCAGCAACGAGAGGCCAAGTAGTAAAGGGATTAATGAAGGCAACACGGGCAAGCCTGTTAAAGTCATGCCAGATTTTGCACAAGTATACAACTTCATTGGCAGTGTTTTTGATCCAAATTCATCTAATCACTTACATAGACTAAAGCAGATGGACCCAATAAATGTTGAAACGGCACTGTTGTTGATGAGAAACCTCTCCATTAATTTAATGAGCCCTGAATTCGAGGATCATAAGAGGCTACTGTCGTCATATGATCCTGACTGCGAGAAGGCAAAGCTTGCTAATCCAGGCACCAAACCAATGACTGCTAAATCTGAAAATGCAGTTCTGTCTGTGTAG 996 0.4357 MVSINPNPSPQGFYFFDPSTMGLPGVNNLPPPPPPSTTAAGASTVSEDPNKKIRKPYTITKSRESWTDQEHEKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKTAPTSSQVMGPLQSSPALVDPAYIYSTDSSSVLGTPVTNLPLSSLNFNATPPASVPQVTTDDTGWTGSGQAVPLNCCYSSSNERPSSKGINEGNTGKPVKVMPDFAQVYNFIGSVFDPNSSNHLHRLKQMDPINVETALLLMRNLSINLMSPEFEDHKRLLSSYDPDCEKAKLANPGTKPMTAKSENAVLSV* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1285 331 CDD SANT 65 108 IPR001005 -
Mal5g1285 331 MobiDBLite consensus disorder prediction 113 152 - -
Mal5g1285 331 MobiDBLite consensus disorder prediction 24 57 - -
Mal5g1285 331 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Mal5g1285 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Mal5g1285 331 Gene3D - 66 113 - -
Mal5g1285 331 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Mal5g1285 331 SMART sant 62 110 IPR001005 -
Mal5g1285 331 ProSiteProfiles SANT domain profile. 61 112 IPR017884 -
Mal5g1285 331 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 61 110 IPR006447 GO:0003677
Mal5g1285 331 SUPERFAMILY Homeodomain-like 57 113 IPR009057 -
Mal5g1285 331 MobiDBLite consensus disorder prediction 138 152 - -
Mal5g1285 331 PANTHER SWI/SNF COMPLEX-RELATED 2 326 - -
Mal5g1285 331 PANTHER MYB TRANSCRIPTION FACTOR 2 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1285 Mal-Chr5 22475306 22483125 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mal5g1285 Myb_DNA-binding 5.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1285 - - gmx:778090 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1285 5 22475306 22483125 Mal5g1285 5 22475306 22483125 ECH