Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1278 ATGGTCGACAATGGCGAATTCGCCGGCACCATTTGCTCAATCTGCTACGAACCTCTCAACCCTATCACCGAAGATCTTCAATCCGTCTCAATCTGCGGTCACGTCTTTCACGAACTCTGTTTGCAGCAATGGTTTGAGTACTGTAAGACATCGAAGAAGCATACTTGTCCTGTTTGCAAGCAAGGTTGCAAGGCGAAAGATGCGTGTCGGCTTTACTTTCAATCGATTGGAGATGGGAATGAAGGTGTTGTTATTCAGAAGAATGTTGGTGTTGAAGAAGATGCTGGTGTTTTGAGGAAGGAAGTTAAGAGATTGGAGGGGAAAGTTTCGGGGATTAGTACGGTTTTGGAAAAACAAACTAAGGAATTAGATGAACTTAAAGATGAGCTTTGTACTTGCAAGGAGCAGACGAAGATAGAAATAGCATCAAAGAATGAAGCCTTGAAGCAAAAAACATCCTTACAGTTCCAGCTTAATGTGAAATCAGAGGAGCTTGAGAAGTCAAATTTGGAGCGTTTTAGATTGCAAGAGAGAAATATGGCATTGGCTAAAGAACTTGCAGCATTAAAATTAGTGTCTGATCTGGACCTTGGTGAAGATGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTAAAGAAACAGTAGACACATTAAAAAGATCTCTTGTCCTGCGGAACAGGAGTTACAAAGAGTTAATGACCAAGTGTAATATTCTGGGGAGAGGTGAGGCTCGTTATAGTAAAAAGCTTGAAAAGGCTAATGAGAAAATTAGTAAACTGAAGGCAAGGCTACAAGAACTGGAGACAAAAATGGAAGTAAAAGAGAATGAGTATTTGAAGCATCTGAAAGCTGCCAAGAATATTGAAAACAAAATCAATTCTAATTCTGATGAATTGATGTCTAGCAAATTTTCTTCAAAAGAGCAAAGCAAACAAAGTACAACGCCCAAGTCTGGAATGGATCTGAATAAGAATGACAACAGCAAATCTTTAAAGTCTTTGAAGATAGATAACTCCAAAGCTACCAAAAATAATATTGTGAATGTTAGTAATGAAAGTAAAACAACTTTGTCTCTTGATAAAGATATAGATTGTATCGTCATCGACGAAGATGACTTCAAAGATCATGACAGTGATGATCAAGGAAAGCCAGAAAAAGTACTTGGCACAAAGACTAAAACATCGTTTCAAGGAATATGTGATTTGGCCGAGTCTTCAAGATTTGATATTGACACTGAAATGGCTGACATTACTACTGGCACTATGGATGAAAATGTGACACTACAAGCCAATGCCAAACAAGCTCAACCCATGGTTAACATTAGAAAGGAGTCACCTTTAACAACTTCAAGTTCAGTGGACATGTGCTTTTCTGGTGGGTTGCTTGGTCCTGATGGAACTCAACGATTCTTGGGTAAATGGTGCAAGCGTGGACAAAATGGCGAATCAACATCCACAAAAGGGAATTTGATCTCTGTAGGAGCTGATGGTAGAGGTGGCACAGTCAAAGTTCTAAGGAATCCAAGCCAAGCTTTCTCGGATGGTAAGGAAACTTCAGTAGCTTCAAAAAGGTTGAAGCTTGGACCTAATAAAGCTAGTTCGCAATCCCGGGGGTGCCTGCAGATGGAACACTTTTTTGGGAGGGTCAGTCAGTAA 1665 0.4012 MVDNGEFAGTICSICYEPLNPITEDLQSVSICGHVFHELCLQQWFEYCKTSKKHTCPVCKQGCKAKDACRLYFQSIGDGNEGVVIQKNVGVEEDAGVLRKEVKRLEGKVSGISTVLEKQTKELDELKDELCTCKEQTKIEIASKNEALKQKTSLQFQLNVKSEELEKSNLERFRLQERNMALAKELAALKLVSDLDLGEDEVLKLATLGNGANSKETVDTLKRSLVLRNRSYKELMTKCNILGRGEARYSKKLEKANEKISKLKARLQELETKMEVKENEYLKHLKAAKNIENKINSNSDELMSSKFSSKEQSKQSTTPKSGMDLNKNDNSKSLKSLKIDNSKATKNNIVNVSNESKTTLSLDKDIDCIVIDEDDFKDHDSDDQGKPEKVLGTKTKTSFQGICDLAESSRFDIDTEMADITTGTMDENVTLQANAKQAQPMVNIRKESPLTTSSSVDMCFSGGLLGPDGTQRFLGKWCKRGQNGESTSTKGNLISVGADGRGGTVKVLRNPSQAFSDGKETSVASKRLKLGPNKASSQSRGCLQMEHFFGRVSQ* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1278 554 CDD RING-H2 12 60 - -
Mal5g1278 554 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 553 - -
Mal5g1278 554 SMART ring_2 12 59 IPR001841 -
Mal5g1278 554 Pfam Ring finger domain 11 60 IPR001841 -
Mal5g1278 554 MobiDBLite consensus disorder prediction 296 330 - -
Mal5g1278 554 MobiDBLite consensus disorder prediction 296 336 - -
Mal5g1278 554 SMART ringv_2 11 60 IPR011016 GO:0008270
Mal5g1278 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 62 IPR013083 -
Mal5g1278 554 Coils Coil 246 294 - -
Mal5g1278 554 Coils Coil 109 129 - -
Mal5g1278 554 SUPERFAMILY RING/U-box 10 65 - -
Mal5g1278 554 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1278 1 554 C3H Transcription Factor Family AT4G01270 42.004 1.17e-128 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1278 K11985 - gmx:100812811 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1278 5 22356128 22361513 Mal5g1278 5 22356128 22361513 ECH