Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1277 ATGGAGGTAGATTGGGATCTACATGCTGTAGTCAGAGGCTACACCACCCTCATCTCCTCCTCTTCCACCACCTCCTCCACCACAACCACCACCACAAAAGCCACCGCAACTACACCTTCTTCTGGTTTTGAAACTTCAACTTCTTGCAACAACTTTTTCTCTATATACCCTACAGAACAAACAAGTCAAGTTTTTTCACTTTCAAACCCTTTTGAAAGAAAAAGTTCCATTGAAGAATTGCATGAACTTTGCAAACCTTTCTTCTTCAAATCATCATCACAACCTCTCTCTTCTAATTCATTCTCTTATTCATCACCATCACCAAAATCACCTATCCTACAACCAAAACAACTGCAGATGAATAAGCAGAATCACCATATTGCTCCTGCCACAACACCAAGATCTAAAAGAAGGAAGATTCAACATAAGAAGGTTTGTGAAGTGCAAGCTGAGAATCTCTCATCAGATATATGGGCATGGAGGAAATATGGTCAAAAACCCATCAAAGGATCACCATATCCAAGGGGATATTACAGATGTAGCAGTTCAAAAGGGTGTTTAGCTAGGAAACAAGTTGAGAGAAACAAATCAGACCCAACAATGTTCATAGTTACATACACTGGTGAACATAGTCACCCTGCTCCAACTCATAGAAATTCTCTTGCTGGTTCTACAAGACAAAAGCCATTGTCACCACAAACTGTTACTGCTGAAGACTCTTCCCAACAACCTTTTACAAAACAAGTTTCATCATCCACATCAGAGGCTGAAGAGGAAGAGGCTACACACTTGAGTGCAAAGTCAGAAAGCAAAGATGATTTGGAAAATTTGATGAATGATGAAGATGAGGAAAATGAATTTGAGTTAACTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGCTTTGCTGGAAAAACAGTAGCATCATCTGGTGGTGACTGTTTTGGTGACCCTTTTGCTGCTAGTATTGCACTTCCTGCTTGTGGTGGCCAATGA 1014 0.4004 MEVDWDLHAVVRGYTTLISSSSTTSSTTTTTTKATATTPSSGFETSTSCNNFFSIYPTEQTSQVFSLSNPFERKSSIEELHELCKPFFFKSSSQPLSSNSFSYSSPSPKSPILQPKQLQMNKQNHHIAPATTPRSKRRKIQHKKVCEVQAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLSPQTVTAEDSSQQPFTKQVSSSTSEAEEEEATHLSAKSESKDDLENLMNDEDEENEFELTDMVVTDDFFEGLDELTGFAGKTVASSGGDCFGDPFAASIALPACGGQ* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1277 337 Gene3D WRKY domain 138 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal5g1277 337 Coils Coil 264 284 - -
Mal5g1277 337 MobiDBLite consensus disorder prediction 253 274 - -
Mal5g1277 337 MobiDBLite consensus disorder prediction 208 279 - -
Mal5g1277 337 MobiDBLite consensus disorder prediction 212 252 - -
Mal5g1277 337 MobiDBLite consensus disorder prediction 20 41 - -
Mal5g1277 337 ProSiteProfiles WRKY domain profile. 149 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g1277 337 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 337 IPR044810 GO:0003700
Mal5g1277 337 Pfam WRKY DNA -binding domain 156 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g1277 337 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 337 - -
Mal5g1277 337 SUPERFAMILY WRKY DNA-binding domain 151 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal5g1277 337 SMART WRKY_cls 154 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1277 Mal-Chr5 22333855 22335686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1277 1 316 WRKY Transcription Factor Family AT4G01250 44.892 6.12e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mal5g1277 WRKY 1.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1277 K13425 - gmx:100798084 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1277 5 22333855 22335686 Mal1g2108 1 27590498 27591738 ECH
Mal5g1277 5 22333855 22335686 Mal5g1277 5 22333855 22335686 ECH
Mal5g1277 5 22333855 22335686 Mal3g2774 3 101495093 101496318 ECH
Mal7g4979 7 118728902 118730065 Mal5g1277 5 22333855 22335686 ECH
Mal3g2774 3 101495093 101496318 Mal5g1277 5 22333855 22335686 PCT