Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1273 ATGCACGTCTTCCCTGAACAAACCCCTCCTTCTCTTCCGGTTGAGGTATGCCGTGTTGTTTTCACGTTAGATGTTCAGTATACTGGGTCAATTGAACATGCACAACCATCCAATGCTACTTCAACTGAACAGCCTACTTGTCCAGTACGCCTTGAGCGATTAGATCAAGACACAAGTGGAATTCTTACAACGATATGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAACAGCAGGCTGAAAATTCTATATGTTTCGGTTGTCAAACCACTGAGAACCTTTGGATATGTGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGGCATGCCATAATACACTGGAAAGAGACGCAGCACTGCTATTCCTTGGAAGTGGAAACCAAGCGTGTCTGGGACTATGTGGGAGACAACTATGTTCATAGACTTATTCAGTCCAAAACTGATGGGAAGTTAGTTGAGCTGAACTCTCACTGTGTGCATGCAGACAGTGGATGTGGCAGCTGTGGAGATAATGCCATGAGAGAGGCTATACTTAATAGTAAAGTCGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCTACTCAACTTGAAAACCAAAAATTGTATTTTGAATCCTTATTACAACAAGTAGAACAAGAAACGGAAGGGAAAATTTCCGTAGCTGTTCAGAAGGCTGTCAGATTTTGTGTTGTCTCATTAATATATCACAAGGACACAAGATCTTCTTGCAAATATTTATTGTGTTTATGTCTACAGCTTAATGACAACCTTTTGAAAAATGAGGAGATCTGGAAAGCCAAGTTACTTGAGATTGAAGAGAGGGAGAAAAAAGCTTTAAAACTGTCTGATGATAAGATAATGCAACTGGAAAAGCAGCTTAGTGAGCTCATGGTTTGCCTTGAGGGTGGGAAGACAGTAGAACAGATGCCATTATCAAATGATGCAAATGGTGGAACTGTCTCTGACATTTCAAAAGTATCCTCTTCAACGTGTAGCTCTTAG 1053 0.4055 MHVFPEQTPPSLPVEVCRVVFTLDVQYTGSIEHAQPSNATSTEQPTCPVRLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAENSICFGCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCVHADSGCGSCGDNAMREAILNSKVEAIVNEYNELLATQLENQKLYFESLLQQVEQETEGKISVAVQKAVRFCVVSLIYHKDTRSSCKYLLCLCLQLNDNLLKNEEIWKAKLLEIEEREKKALKLSDDKIMQLEKQLSELMVCLEGGKTVEQMPLSNDANGGTVSDISKVSSSTCSS* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1273 350 Pfam Ring finger domain 46 87 IPR001841 -
Mal5g1273 350 SMART ring_2 47 86 IPR001841 -
Mal5g1273 350 Coils Coil 210 230 - -
Mal5g1273 350 SMART Zf_UBP_1 97 146 IPR001607 GO:0008270
Mal5g1273 350 ProSiteProfiles Zinc finger RING-type profile. 47 87 IPR001841 -
Mal5g1273 350 ProSiteProfiles Zinc finger UBP-type profile. 81 174 IPR001607 GO:0008270
Mal5g1273 350 PANTHER BRCA1-ASSOCIATED PROTEIN 11 344 - -
Mal5g1273 350 SUPERFAMILY RING/U-box 63 162 - -
Mal5g1273 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 176 IPR013083 -
Mal5g1273 350 Pfam Zn-finger in ubiquitin-hydrolases and other protein 98 157 IPR001607 GO:0008270
Mal5g1273 350 CDD RING-H2_BRAP2 45 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1273 Mal-Chr5 22288052 22291417 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1273 43 87 C3H Transcription Factor Family AT1G72220 46.809 7.33e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1273 K10632 - gmx:100794688 526.939