Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1260 ATGTCTTCCTCAAACTCTTTTTCTCCACCACCTCAAATCCCTTACCTCACCAATCTTGGCTTTGGCTACTCCATAGCCATAGCTCTTGGCTTCCTCTTCCTTCTTTCAACTCTCATTCTTTCATCTTACCTTTGTTGCCGCACTTTCCGCAACAGAAATAACCACCGGAGTAGCAACAATCAGCATAACCCGGACGGCATAGTTTTGCCGCGGGTTATTTTCGTAGCCGAAGACGAAGAAGATCGTGAAGATGTTGTTTTGGGTTTGGACCAGAACGTTATAAATTCGTATCCGAGGTTACAGTATGGTAAAGATTTGGGACACGACAGCACGTGTTCGATCTGTTTGTGTGAGTACAAGGATTCGGAGATGTTGAGGATGATGCCGGAATGTAGACACTACTTTCATCTATGTTGTCTTGATTCGTGGTTGAAACTTAACGGTTCTTGTCCCGTTTGTCGGAACTCACCTATGCCAACGCCGTTATCTACTCCGTTACAAGAAGTTGTTCCACTTTCTCATTACATTGGTGAAAGAAGGACTAGGAGGTAG 552 0.4457 MSSSNSFSPPPQIPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRNNHRSSNNQHNPDGIVLPRVIFVAEDEEDREDVVLGLDQNVINSYPRLQYGKDLGHDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRTRR* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1260 183 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Mal5g1260 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 159 IPR013083 -
Mal5g1260 183 SUPERFAMILY RING/U-box 97 159 - -
Mal5g1260 183 Pfam Ring finger domain 111 154 IPR001841 -
Mal5g1260 183 PANTHER RING-H2 FINGER PROTEIN ATL67 4 181 IPR044289 GO:0016567|GO:0016740
Mal5g1260 183 SMART ring_2 112 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1260 Mal-Chr5 22210914 22211465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1260 11 176 C3H Transcription Factor Family AT5G07040 38.824 1.53e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1260 - - vra:106773185 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1260 5 22210914 22211465 Mal5g1260 5 22210914 22211465 ECH
Mal3g2802 3 102151680 102152243 Mal5g1260 5 22210914 22211465 PCT