Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1172 ATGGGAGAAAACATCAAGTGTGAACAAATTGGTCTCATTGGTGAACTAATGCAAGGGGAGGAGCTATCAAAGAAGCTATATGACCAACTTTTCTCTCCATCATCACCATCATCATCAACATCTTCATCATCATCAATTTCATCACATGTAGCAAATCAAGTATTAATTGACAAAATAATTTTGTCCATTGAGAAAGCACTAACCATGGTGAAGGGTAATGTTGGAAAAAGTAATTCAAACAATGTCAACATGATGGATTCTCATTGTTCAATTGGAAGCCCTAAAAGCGAGGTCCAAGACTCAAAGTTCAAGCACAAACATGTATCCAAGAAAAGAAAAACCATGCCTAAGTGGACTGAGCAAGTGAAGGTTTACTCTGGAACAGCAGCTGAAGGGTCTGTAGAGGATGGTTATAGCTGGAGAAAGTATGGACAAAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGACATACACAAGGTTGTCTAGCTACTAAGCAAGTGCAAAAATCAGATGAAGATGAAATGATATGTGAGATAACTTACAAAGGAAGACACACATGTACCCAATCTAGTCATTTGAACAAGACACTCCCATCAAAAACAAAGTTGAAATTTGAACAAAATAAATCACAACCCAATCAAAAAATTCAACCACAAGAAGAGAAAATACAACCACCCCAAGAAACAATTTTCTCTTTTGACAACAAAGAGGATATATTCCCATCATTCAATTTTTCCTCTTCATCAATAGGATCTGAAAATGAGGATAACAACATATTTTTAGAGACCAACAATTTCATGGAAAATGAGGACAACAATATATTCTCAGAATCAAACATTTTTTGCTTGTCACTATTGGATTTGGACAACACTGGACTAGGCCCAAGTGAGAGTGACATCACAGAGATAATTTCAGGCCCAAGTTCTATTGCCAATTCCCCAATGGATTTGGATCTCTATAATGACATAAATTTCGACATGGATTTCTCCATCAACACACAAGAATTTGCTATTGGTGAATATTAA 1047 0.361 MGENIKCEQIGLIGELMQGEELSKKLYDQLFSPSSPSSSTSSSSSISSHVANQVLIDKIILSIEKALTMVKGNVGKSNSNNVNMMDSHCSIGSPKSEVQDSKFKHKHVSKKRKTMPKWTEQVKVYSGTAAEGSVEDGYSWRKYGQKDILGAKFPRGYYRCTHRHTQGCLATKQVQKSDEDEMICEITYKGRHTCTQSSHLNKTLPSKTKLKFEQNKSQPNQKIQPQEEKIQPPQETIFSFDNKEDIFPSFNFSSSSIGSENEDNNIFLETNNFMENEDNNIFSESNIFCLSLLDLDNTGLGPSESDITEIISGPSSIANSPMDLDLYNDINFDMDFSINTQEFAIGEY* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1172 348 Pfam WRKY DNA -binding domain 135 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g1172 348 ProSiteProfiles WRKY domain profile. 129 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g1172 348 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 1 342 - -
Mal5g1172 348 SUPERFAMILY WRKY DNA-binding domain 133 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal5g1172 348 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 342 IPR044810 GO:0003700
Mal5g1172 348 SMART WRKY_cls 134 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g1172 348 MobiDBLite consensus disorder prediction 91 115 - -
Mal5g1172 348 Gene3D WRKY domain 120 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1172 Mal-Chr5 20961224 20963533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1172 45 205 WRKY Transcription Factor Family AT5G24110 44.720 4.59e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mal5g1172 WRKY 4.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1172 - - aprc:113849885 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1172 5 20961224 20963533 Mal5g1172 5 20961224 20963533 ECH
Mal5g1172 5 20961224 20963533 Mal3g5131 3 131389462 131391338 ECH
Mal7g5021 7 119352163 119353483 Mal5g1172 5 20961224 20963533 ECH