Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1163 ATGAGCCCTGCTGCCGACAAACACGGAAGTTCATGGAAGAAGAAGAATTCTTCTTCATTTGGGAAGAAAAGAAAAAGTGATGATGATTTGACAAAGGAAAAACCTATTAAGAACTCAAAAACAAGTGGTGATAATGATGATAATGAAGTGGTAGCAGAAACAGGACAAAATTTTAAGGTTGTTGTTGGTGGTGGTGGTGATGTTGTTTCTGGAATTGTTGGGGTACCTGGTTCTTATTTGAGTGAATCAAGATTCGACAAATGTTCAGTCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAAAAAATGACCATTGTGCAGGAGGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTCGCTAAGGCTAAAACAGGAACGGGAAAAACAGTCGCCTTTTTGCTTCCATCAATTGAAGTTGTTGTGAAGTCTTCACCAAGTGACCAAAAGCGAACACCAATTCTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCACTAAACTGCTTAAGTATCATCCTACCATCGGTGCTCAAGTTGTGATTGGAGGAACAAGTCTTGGTTCAGAACAGAAACGCATTCAAAAAAATCCTTGCCAGATCCTTGTTGCTACGCCTGGAAGGCTTAAAGATCATATTGCTAATACTACTGGTTTTGCATCTAAGCTTATGGGAGTGAAGACCTTGGTGCTCGATGAAGCTGATCAGTTACTAGACATGGGATTTCGCAAAGATCTTGAGAAAATAATCGCTTCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCTACCATTCCGGACGCGGTGCATCAAGTCTGTAATGTTGCTTTGAGAAAGGATTTTGAATTTATTAATACAGTTCAGGAGGGTTCTGAGGAGACACATTCACAGGTCCGGCAGATGCAGTTAATTGCCCCACTAGACAAACATTTCCCTTTACTCTCTGTTATTCTGAAGGAACACATTGCTGATGATGTTGACTATAAGGTTCTTGTTTTTTGCACAACTGCTATGGTCACAAGCCTTGTTGCTAAGCTCCTTGGGAAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGGAAGAATCAGAGTTATAGAACCAGAGTTTCTGATGAATTCCGGAAGTCAAAGAGGCTCATCCTGGTTACTTCGGATGTATCTGCACGTGGAGTTGATTATCCTGATGTTTCTCTTGTTTTACAGGTTGGCCTACCGGCTGATAAACAACAGTATATACATCGACTAGGTAGAACAGGGCGAAAAGGAAAAGAAGGGCAGGGCATACTGCTACTAGCTCCTTGGGAAGAATTCTTTTTAGCTTCCGCAAAAGATTTGCCTATTGAGAAAGCTCCGGTACCTTTGGTTGATCCCGACACTAAGAAAAAGGTGGAAAGGGCTCTTTCCAATGTGGAGATGGAGAGTAAAGAAAAAGCATATCAGGCATGGCTTGGTTACTACAATTCTAACAAGAAAGTTGGGAAAGATAAGAAGAGTTTAGTGGCGCTTGCAAACGAGTTCAGTCGATGCATGGGACTTGTAAACCCTCCAGCTATTTCTGCGCTTATCCTTCGCAAGATGGGTCTTCAAAATGTTCCTGGTTTGCGTTCCAAATAG 1650 0.4182 MSPAADKHGSSWKKKNSSSFGKKRKSDDDLTKEKPIKNSKTSGDNDDNEVVAETGQNFKVVVGGGGDVVSGIVGVPGSYLSESRFDKCSVSPLSLKGVKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSSPSDQKRTPILVLVICPTRELACQAAAEATKLLKYHPTIGAQVVIGGTSLGSEQKRIQKNPCQILVATPGRLKDHIANTTGFASKLMGVKTLVLDEADQLLDMGFRKDLEKIIASVPKQRQTLMFSATIPDAVHQVCNVALRKDFEFINTVQEGSEETHSQVRQMQLIAPLDKHFPLLSVILKEHIADDVDYKVLVFCTTAMVTSLVAKLLGKLNLNVREIHSRKNQSYRTRVSDEFRKSKRLILVTSDVSARGVDYPDVSLVLQVGLPADKQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLASAKDLPIEKAPVPLVDPDTKKKVERALSNVEMESKEKAYQAWLGYYNSNKKVGKDKKSLVALANEFSRCMGLVNPPAISALILRKMGLQNVPGLRSK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1163 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 449 IPR027417 -
Mal5g1163 549 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 31 56 549 - -
Mal5g1163 549 Gene3D - 74 296 IPR027417 -
Mal5g1163 549 Pfam Helicase conserved C-terminal domain 333 434 IPR001650 -
Mal5g1163 549 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 330 480 IPR001650 -
Mal5g1163 549 PANTHER RNA HELICASE 56 549 - -
Mal5g1163 549 CDD DEADc_MSS116 90 297 - -
Mal5g1163 549 MobiDBLite consensus disorder prediction 1 50 - -
Mal5g1163 549 SMART ultradead3 102 313 IPR014001 -
Mal5g1163 549 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 114 295 IPR014001 -
Mal5g1163 549 SMART helicmild6 353 434 IPR001650 -
Mal5g1163 549 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 83 111 IPR014014 GO:0003724
Mal5g1163 549 Gene3D - 304 529 IPR027417 -
Mal5g1163 549 CDD SF2_C_DEAD 310 443 - -
Mal5g1163 549 MobiDBLite consensus disorder prediction 21 47 - -
Mal5g1163 549 Pfam DEAD/DEAH box helicase 109 283 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1163 Mal-Chr5 20858588 20863168 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1163 83 462 Eukaryotic Initiation Factors Gene Family AT3G19760 28.316 1.56e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1163 - - vvi:100258444 782.711