Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1162 ATGACAAAACTATTCTTATCACAACTTCGTCTTCTTCCATTCCACCCAATGAAACTCCACTCACTCTCTCTCTCCAAACTCTCTCACCTCCCTCTCCGCAACGCTGCCTTTCATCCTCGCCCCTTTTCTGTCCGTCCAGACAGAATCAGAGCTTCTAAAAGCCTCGTCGACGACGAGGCTGAGCTTAGTAATTGGGTCGATGATTTGCGTACCGGCCGTGGCGCCGAGACTTTGAAACCTACCCAGAGGGTAGGTTCTAGGGAACCCGTTGTCAGAGACGGCGGGTTCCGGAAGGGTAGTGTTAGTAGAAGGGGTGATTCTTCATTGGGGCAGAGAAAAGGTGGTGATTTTAAGAAGGGGAAACCTAATTTGAATGCAAAGAGAAGATTTGGATTGAGTAGTGATAGTGATGATGGTGATAATGATGAGGTGGTTGAAAGAGGGAAGTTTAAGGGTGGTGGTGGTATTGGAAGTATTGGTGAGTTTCTTAGTGAAGATGATGTTGAAGGAGAAGAAGAGAGTCATGATGATGATGATGATGATGATGATGAGGAAGAGATAGTTAACAAGAGTAGAGGTGTTTTGTTTGGTAAACAAAATGGGGTGTCAAATACTACTAGACCTGCTTCATCTGGTGGAAGTGATTCTTATTTAAGTGATTCTAGATTCGACCAGTGTCCAGTCTCTCCTCTGTCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTTGTTCAGGAGGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTGGCCAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGTGAAGTCTCCACCAAGTGATCGTGATCAAAGGCGTCCTCCAATTTTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCATGTCAAGCGGCTGCAGAAGCCACTAAACTGCTCAAGTATCATCCTACCATCGGTGTTCAAGTTGTGATTGGAGGAACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTGCATCTAGGCTTATGGGGGTGAAGGCCTTGGTGCTCGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCTGCAATCCCTAAACAACGACAAACACTTATGTTTTCTGCAACGATTCCGGACGAGGTGCGTCAAGTCTGTCATGTTGCTCTGAAAAGGGATTTTGAATATATTAATACAGTTCAGGAGGGTTCTGAGGATACACATGCACAGGTCCGCCAAATGCATTTAGTTGCACCATTAGACAAGCATTTCCCTTTACTCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGATCTCCTTGGGGAGTTAAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTTTCCGATGAATTCCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCCGCACGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTTGGCCTACCAGCTGATAGACAACAATATATACATCGACTAGGTAGAACGGGGCGTAAAGGAAAAGAAGGGCAGGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTTTTAGCTACAGCAAAAGATTTGCCTATTGGGAAAGCTCCAGTACCATTAGTTGATCCTGACACTAAGAAAAAGGTGGAAAGGGCTCTATCCAATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCTAACAAGAAAGTTGGGAAAGATAAGTATAGGTTAGTGGAGCTTGCGAATGAGTTTAGTCGATGCATGGGGCTTGATAATCCTCCAGCTATTCCTAAACTTGTCCTTGGCAAGATGGGTCTTAAAAATATCCCTGGCTTACGTTCCAAATAG 2070 0.4348 MTKLFLSQLRLLPFHPMKLHSLSLSKLSHLPLRNAAFHPRPFSVRPDRIRASKSLVDDEAELSNWVDDLRTGRGAETLKPTQRVGSREPVVRDGGFRKGSVSRRGDSSLGQRKGGDFKKGKPNLNAKRRFGLSSDSDDGDNDEVVERGKFKGGGGIGSIGEFLSEDDVEGEEESHDDDDDDDDEEEIVNKSRGVLFGKQNGVSNTTRPASSGGSDSYLSDSRFDQCPVSPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPSDRDQRRPPIFVLVICPTRELACQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAIPKQRQTLMFSATIPDEVRQVCHVALKRDFEYINTVQEGSEDTHAQVRQMHLVAPLDKHFPLLYAILKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADRQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLATAKDLPIGKAPVPLVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRCMGLDNPPAIPKLVLGKMGLKNIPGLRSK* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1162 689 MobiDBLite consensus disorder prediction 109 123 - -
Mal5g1162 689 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 28 116 - -
Mal5g1162 689 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 191 687 - -
Mal5g1162 689 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 252 435 IPR014001 -
Mal5g1162 689 Pfam Helicase conserved C-terminal domain 469 574 IPR001650 -
Mal5g1162 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 589 IPR027417 -
Mal5g1162 689 MobiDBLite consensus disorder prediction 131 149 - -
Mal5g1162 689 MobiDBLite consensus disorder prediction 196 221 - -
Mal5g1162 689 CDD SF2_C_DEAD 450 583 - -
Mal5g1162 689 Gene3D - 196 436 IPR027417 -
Mal5g1162 689 PANTHER RNA HELICASE 28 116 - -
Mal5g1162 689 MobiDBLite consensus disorder prediction 164 186 - -
Mal5g1162 689 SMART ultradead3 240 453 IPR014001 -
Mal5g1162 689 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 221 249 IPR014014 GO:0003724
Mal5g1162 689 MobiDBLite consensus disorder prediction 79 221 - -
Mal5g1162 689 Gene3D - 445 667 IPR027417 -
Mal5g1162 689 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 630 IPR001650 -
Mal5g1162 689 CDD DEADc_MSS116 228 437 - -
Mal5g1162 689 SMART helicmild6 493 574 IPR001650 -
Mal5g1162 689 Pfam DEAD/DEAH box helicase 246 423 IPR011545 GO:0003676|GO:0005524
Mal5g1162 689 PANTHER RNA HELICASE 191 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1162 Mal-Chr5 20852114 20857526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1162 221 602 Eukaryotic Initiation Factors Gene Family AT3G19760 28.321 4.39e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1162 - - gmx:100795739 937.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1162 5 20852114 20857526 Mal5g1162 5 20852114 20857526 ECH