Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1148 ATGGACATCTTGAAGGTCCTTCTTTACTTAATCTTTCCTGCCGTATACGGCTTAAACGATTGCCCGTTTTCTTTTTGTGGCAACAGTAGTTTCCTAATTCGTTTCCCCTTTCAACTAGAAGGTGAACAATCTCCTTATTATTGTGGCTATCCTGGTTTCAACTTAATCTGTACAAATAATAGAAAAACAGTTCTAGAACTTCCTTATTCTGGAGAATTCTATGTACGCAGCATAAACTATCTCACACAACAGATACAACTCTATGATCCTAAGGATTGTCTTCCCAAACGTCTTCTAAGCCTCAACTTTTCAAGTTCTCCTTTTATTACAACTTTTAGTCGTGACTACACCTTCTTAGGCTGCTCATCTCAGAATATAGGGTCACAATTCATTCCCATTGATTGTCTTAGTAACTCCACATATTTTGTATCAGCCATTCCTTCAGTTAACTTAGTCAATTCTCTGCCTGGTTGTTCTGTTATAAAAAATCTTTCAGTTCCAATTGCAAGACCAGAACGGTATCAAGAAAATCTCAGAGATGATCTTAGTGCAGATATTCAATTAACATGGGATAAACCTGATTGCAGTTATTGTGAATCACATGGGCTAATGTGTGGATTTGAAAGCATTAACAGCTATCGAGTTGTCTGTATCTCTGATCACCAAGCAGGTACATCGCGACAAGGACTTAAAGTTTTCAGAATCATAGCATTATGTGTTACTGGACCAGCTCTAATCTTTGTTATATTAATGGCAAGTTGTGTGTGCTACACTGATAGAATAGGCAACATTACCAGAAATGCTGCTTCCCGGTCAGCACCAACTGCAATATCACCACAACCTGATGCCACAGTAATTACAGGTCTAGATGAATCCACAATTGAATCTTATGAGAAAGTAGTTCTTGGGGAGAGTCGACGTGTTCCCGGACCAAACGACGGATGTTGTTGGATATGCTTGGCTGAATACAACAGTAAAGAGACAATAAGATGCATTCCTGAATGCAAACATTGTTTCCATGCTGATTGCATTGATGAGTGGCTTCGTATGAATGTTACATGCCCTGTTTGTCGTAACTCTCCTGCTCCTTCTCCTCTTAATGTTGCCTCTAGTATTCCTTGA 1122 0.3913 MDILKVLLYLIFPAVYGLNDCPFSFCGNSSFLIRFPFQLEGEQSPYYCGYPGFNLICTNNRKTVLELPYSGEFYVRSINYLTQQIQLYDPKDCLPKRLLSLNFSSSPFITTFSRDYTFLGCSSQNIGSQFIPIDCLSNSTYFVSAIPSVNLVNSLPGCSVIKNLSVPIARPERYQENLRDDLSADIQLTWDKPDCSYCESHGLMCGFESINSYRVVCISDHQAGTSRQGLKVFRIIALCVTGPALIFVILMASCVCYTDRIGNITRNAASRSAPTAISPQPDATVITGLDESTIESYEKVVLGESRRVPGPNDGCCWICLAEYNSKETIRCIPECKHCFHADCIDEWLRMNVTCPVCRNSPAPSPLNVASSIP* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1148 373 SUPERFAMILY RING/U-box 309 361 - -
Mal5g1148 373 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Mal5g1148 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 363 IPR013083 -
Mal5g1148 373 SMART ring_2 316 357 IPR001841 -
Mal5g1148 373 Pfam Ring finger domain 316 358 IPR001841 -
Mal5g1148 373 Pfam Wall-associated receptor kinase C-terminal 154 219 IPR032872 -
Mal5g1148 373 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 366 - -
Mal5g1148 373 Pfam Wall-associated receptor kinase galacturonan-binding 21 89 IPR025287 GO:0030247
Mal5g1148 373 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 5 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1148 Mal-Chr5 20533782 20536369 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1148 23 363 C3H Transcription Factor Family AT2G25410 43.353 2.58e-89 272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1148 5 20533782 20536369 Mal5g1148 5 20533782 20536369 ECH