Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1146 ATGGTAATTAAGCGTGGTGTGAAAATTGAAATGCCGAAATTAAAACGGTGTAAATTGGATGAACCTCATTCTGAAGGTTGTTCTGGGATTCAGAAAAAGTGTAAGGTGAATGAGTTTTGTTCAGAAGAGGATTTTAGTAGTGGTTCTGCTTCTTGGAGCAGTGAAGTTTCAAATAATGGTGGTGAGGGTGGTTGTGAGGTTGAATTGAATTCAAATTCACGGAAAACGGTGAAAGTACGGTGCTCGGGAGTGGCTCAGCCTCCGTTATTGCGATCTTCACGTGGTCGCCATCAGGTGCTTCCATCGAGGTTTAATGATTCGGTTATTCTTGATACATGGAAGAATCAAGGAATGAAAACGGAGGATGAAGATGGTGATTTCAGCTTTGAAGATGATGGAAGTTTTGTTGAGGATGATAAGGTTAAGGTTAACAAGAGTGATGCTGGAGTGACGGTGAAGAAGGAGAGTAATGCTTCTGGTTCTGTTCTGAGTTTTAAGGTTGTAGAGGAAAAGACTAATGGGAATGTTACAAGGAGAAAAGATGTTTATAGGCCGGAGGATTTTGCTTTGGGTGATATTATTTGGGCGAAATGCGGCAAGAGGTATCCGGCTTGGCCTGCTCTGGTGATTAATCCTCGCTTAGAGGCTCCTCAATCCGTCATCGACTGTTTTGTTCCCGATGCACTTTGTGTGATGTTTTTTGGTTATTCAAAATCAAAAAATGGACCTCAAAGGGATTATGCATGGGTGAGGCAGGGAATGATATTCCCCTTCGCGGAATTCATGAACAGATTTCAGGGGCAGACTCAGTTGTTCAAGAGCAAACCGAGTGACTTTCACATGGCACTGGAGGAGGCAAAGTTGGCAGAAGATGGTGTTCTGGAATCACATTTGGGAGCGAAGGAAGTGACTGATGTCGAAGCACATCCTGATAGACTTCAAGAGGTCCCGGTTTCAAATATTGATCAAGAATATTACTGCCAGGATGAGGATACTAGATGTTGTGCTAGCTGTGGTTTGATGTTGCCACGTAAAACCATGAAGAAGGTTAAGGATTCTAGTCATGCACCACAATTTCAATGCAAACATTGTGCCAAGTTACGAAAATCAAAACAATATTGTGGAATTTGCAAAAAGATTTGGCACCATCCAGATGGTGGGAATTGGGTATGTTGTGATGGTTGCGATGTATGGGTGCATGCTGAGTGTGACAGAATTTCTACGGAACATTTCAAGGATCTGGAAAATACTGATTACTATTGTCCAGATTGCAAGGAAAGAATCAATTGTAAATTACCGGAATCACCAACATACAAGTCAAAAATCAATTCAGTGGAGAAAATCCAAAATGGTGTTGTACCTAGATCAGTGGAGAATAGCCAAAATGGTGTGGTACCTGAGAAGGTAATGGTGGTGTGCAATGGCATGGAAGGAATTTACCTCCCAAAGCTTCATTTAATTATGTGCAAGTGTGTCTCTTGTAATTCAAAGAAGCGGCCACCAAGTGAATGGGAAAAACATACTGGAAGCAGAGCCAAGAAATGGAAATACAGTGTGAAAGTGAAAAGCACAATGCTACCGCTTGAAAAATGGATCTCGGAGCACATTCCAGAAGATGGAGTTTCCCAGGAATTAGATCAGCAGCAGGTGCTTGCCTTTTTGCAAGAGAAGTATGAGCCAGTTCATGCAAAATGGACGACCGAAAGATGTGCTATTTGTAGATGGATTGAAGATTGGGAAGATAACAAAATTATAATCTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGTGCAAAGAATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTATGCGAAACTCCTGATGTTGAAAGAGAGTGTTGCCTTTGTCCAGTAAAAGGTGGTGCTCTGAAGCCAACTGATGTCGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCAACATGTAGTTGATTTCAAAAACCCTGAGACCATGGAACCTGCTCTCGGAATTCTTAGAATTCCTCCTAATTCCTTTGTGAAGACTTGTGTAATTTGTAAACAAAGCCATGGTTCTTGTACAAGTTGTTGCAAGTGTGCTACTCATTTTCATGTAATGTGCGCATCAAGAGCTGGGTATACCATGGAATTGCATACCATGGAGAAGAATGGTACTAAAATAATAAAGAAGTTAATGTACTGCGCAGTTCATAGAGTCCCAAGTCCAGATTCTGTACTGGTTGGACATTCATCCCTGGGGATTTTTGCTCCCATAACTTCGTTTGAAAATCACAAGGGATGCTTCCGGGGATCAAGGCTGGTATCATCAAAGAATATAGAGCTCAATGAAGGTTCAACTGCTGAAAATGATAGGGTCGAGCCATTTTCTACTGCAAGATGTCGTGTGCACCTAAGGTCTTCTAATAAGAGAGCTGATGTGCCAATAATTCACTTGCTGAGGGGACCCAGTCTTCATTCTTTAGGTGAAATAACTCAGTTGAACAACTATAAGGATGCTAAAGTTTCTAAAGTATTTACTTCTTTCAAGGAACGTCTTCACGATCTGCAGAAAACTGAAAAATTAAGAATTTGCTTCGGAAAATCGGGTATTCATGGATGGGGTCTCTTTGCTCGAAGAGATATACAAGAAGGAGATATGGTTGTCGAGTATCGAGGTGAGAAGGTAAGGGGTAGTGTCGCTGATCTGAGGGAAGCAAGATATCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGTGAGGAAGTAGTCATCGATGCAACACGCAAGGGCAATATAGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCTATGCAAGGATTTTGAGTTTGGGTGATCAAGGGAACCGTATTGTTCTTATTGCGAAAACCAATGTTTCTGCTGGCCAAGAACTAACGTATGATTACTTGTTTGATCCAGACGAGCAAGAAGAACTGAAAGTTCCCTGCCTTTGCAGAGCACCTAATTGTAGAAAATTTATGAATTAG 3006 0.4148 MVIKRGVKIEMPKLKRCKLDEPHSEGCSGIQKKCKVNEFCSEEDFSSGSASWSSEVSNNGGEGGCEVELNSNSRKTVKVRCSGVAQPPLLRSSRGRHQVLPSRFNDSVILDTWKNQGMKTEDEDGDFSFEDDGSFVEDDKVKVNKSDAGVTVKKESNASGSVLSFKVVEEKTNGNVTRRKDVYRPEDFALGDIIWAKCGKRYPAWPALVINPRLEAPQSVIDCFVPDALCVMFFGYSKSKNGPQRDYAWVRQGMIFPFAEFMNRFQGQTQLFKSKPSDFHMALEEAKLAEDGVLESHLGAKEVTDVEAHPDRLQEVPVSNIDQEYYCQDEDTRCCASCGLMLPRKTMKKVKDSSHAPQFQCKHCAKLRKSKQYCGICKKIWHHPDGGNWVCCDGCDVWVHAECDRISTEHFKDLENTDYYCPDCKERINCKLPESPTYKSKINSVEKIQNGVVPRSVENSQNGVVPEKVMVVCNGMEGIYLPKLHLIMCKCVSCNSKKRPPSEWEKHTGSRAKKWKYSVKVKSTMLPLEKWISEHIPEDGVSQELDQQQVLAFLQEKYEPVHAKWTTERCAICRWIEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFQHVVDFKNPETMEPALGILRIPPNSFVKTCVICKQSHGSCTSCCKCATHFHVMCASRAGYTMELHTMEKNGTKIIKKLMYCAVHRVPSPDSVLVGHSSLGIFAPITSFENHKGCFRGSRLVSSKNIELNEGSTAENDRVEPFSTARCRVHLRSSNKRADVPIIHLLRGPSLHSLGEITQLNNYKDAKVSKVFTSFKERLHDLQKTEKLRICFGKSGIHGWGLFARRDIQEGDMVVEYRGEKVRGSVADLREARYRSEGKDCYLFKISEEVVIDATRKGNIARLINHSCMPNCYARILSLGDQGNRIVLIAKTNVSAGQELTYDYLFDPDEQEELKVPCLCRAPNCRKFMN* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1146 1001 Gene3D - 181 294 - -
Mal5g1146 1001 SUPERFAMILY FYVE/PHD zinc finger 372 431 IPR011011 -
Mal5g1146 1001 SUPERFAMILY Tudor/PWWP/MBT 181 315 - -
Mal5g1146 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 430 IPR013083 -
Mal5g1146 1001 SMART PHD_3 680 736 IPR001965 -
Mal5g1146 1001 SMART PHD_3 569 616 IPR001965 -
Mal5g1146 1001 SMART PHD_3 373 425 IPR001965 -
Mal5g1146 1001 Pfam PHD-finger 373 426 IPR019787 -
Mal5g1146 1001 Pfam PHD-zinc-finger like domain 623 735 - -
Mal5g1146 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 564 618 IPR013083 -
Mal5g1146 1001 SMART PWWP_4 188 259 IPR000313 -
Mal5g1146 1001 CDD PHD_TCF19_like 374 424 - -
Mal5g1146 1001 ProSitePatterns Zinc finger PHD-type signature. 570 615 IPR019786 -
Mal5g1146 1001 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1001 IPR025780 -
Mal5g1146 1001 SUPERFAMILY SAND domain-like 468 527 IPR010919 -
Mal5g1146 1001 ProSiteProfiles PWWP domain profile. 190 261 IPR000313 -
Mal5g1146 1001 ProSiteProfiles Zinc finger PHD-type profile. 567 618 IPR019787 -
Mal5g1146 1001 ProSiteProfiles Zinc finger PHD-type profile. 371 427 IPR019787 -
Mal5g1146 1001 SUPERFAMILY SET domain 833 998 IPR046341 -
Mal5g1146 1001 CDD PHD_ATX3_4_5_like 569 615 IPR042011 -
Mal5g1146 1001 ProSiteProfiles Post-SET domain profile. 985 1001 IPR003616 -
Mal5g1146 1001 Gene3D SET domain 840 1001 IPR046341 -
Mal5g1146 1001 Pfam SET domain 870 975 IPR001214 GO:0005515
Mal5g1146 1001 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 737 IPR013083 -
Mal5g1146 1001 SMART PostSET_3 985 1001 IPR003616 -
Mal5g1146 1001 SMART set_7 859 982 IPR001214 GO:0005515
Mal5g1146 1001 SUPERFAMILY FYVE/PHD zinc finger 567 632 IPR011011 -
Mal5g1146 1001 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 1 1001 - -
Mal5g1146 1001 ProSiteProfiles SET domain profile. 859 976 IPR001214 GO:0005515
Mal5g1146 1001 Gene3D - 455 539 IPR010919 -
Mal5g1146 1001 CDD SET_SETD1-like 848 997 - -
Mal5g1146 1001 ProSiteProfiles Extended PHD (ePHD) domain profile. 621 736 IPR034732 -
Mal5g1146 1001 PANTHER PHD FINGER PROTEINS 1 1001 - -
Mal5g1146 1001 Pfam PHD-finger 582 616 - -
Mal5g1146 1001 Pfam PWWP domain 191 289 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1146 Mal-Chr5 20497106 20507047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1146 330 398 EF-hand Containing Proteins AT5G28340 57.971 6.38e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal5g1146 zf-HC5HC2H_2 1.4e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1146 - - cam:101496041 1576.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1146 5 20497106 20507047 Mal5g1146 5 20497106 20507047 ECH