Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1119 ATGAAGATTGAAGTGGGTTTAGGAGGAAATAGGTTATGGAATGAAGATGAAAAAGCTATGGTGGTTGAAGTTTTAGGTGTCAATGCTTTTGATTACTTGGTTACAAACTCAGTTTCAAATGAGAATCTTTTGACAGCAATTGGTAGTGGTGAGAATCTTGAAAACAAGCTTTCTGATCTAGTTGAAAGATCCAACGTTTCGAATTTCAGTTGGAATTATGCAATTTTTTGGAGAATTTCTCAGTCAAAGTTTGGTGATTGGGTTTTAGGTTGGGGAGATGGGTGTTGTAGGGAACCTAAAGAGGAAGAAAAGGAACAAAATTTGGGGATGAAAAGTGTTGTTGAGGATGAAAAGCAACAAAGAATGAGGAAAAGGGTGTTGCAGAAGCTTCACACATCATTTGGTGGTTTAGATGATGACAATTATGCTTTTGGATTGGACCGTGTTACTGATACAGAGATGTTCTTTCTTGCATCAATGTATTTCTCTTTTCCTAATGGACATGGTGGACCAGGTAAGTGTTTTGCATCTGGGAAGCATTTGTGGTTATGTGATGCATTGAAATCTAGTAGCTCTGATTATTGTGTTAGGTCTTTCTTGGCTAAATCTGTTGGATTTAAGACTATTGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAATTGGGTTCTGTTAGAATGGTTGGTGAGAGTTTTGAATTGTTGCAAACTATTAAATCTGTGTTTTCAACACAATCATCGTTTGCTAGGGTTAAGTCGATTTCATTGTTGGATGAAAAGAGAGACGAGAATGCTCCTTTTTCGTGTTTGAAAGTTGGAGAGAGTGTTAAGAACAATAGTAATAATAATGGTAATCTTCAACTTCATCATCAGAATAATAATAATCATGGTAGAGTAGAGGGGATTGGAGTTCCGAAGATTTTTGGGCAGGATTTGAACTCGGCGACACATTTTCGGGAGAAACTTGCTATTAGGAAAATGGATGATAGACCATCATGGGGAAGCTGTCCGAATGGGAATGGAATTAGTTTTCCCAATGGCGTTCATGGTTCGAATTGGAGAGGTAGTCAAGTTGTGAGGCAGCATGCGCCTGCTGATGTTTTTGCTCCTAGGCCTTCCACGAGCAACGTTTCGGAATTAGCCAATGGTGGGAGACATGATTTCGTGCTTAACAACTACCAACAGCAACGGAAGCCACAAATGCAAATTGATTTCTCAGGAGCCACATCGAGGCCTTCCGTGAGATCAATTGTTGGTGAGTCGGAGCTTTCTGATGTTGAAGCTTCTTGCAGGGAGGAGAATCCGAGTCCCTCCGATGATAGGAGGCCGAGGAAGCGTGGCAGAAAGCCAGCAAATGGAAGGGTAGAACCTCTCAATCATGTGGAAGCAGAGAGGCAAAGACGCGAGAAGTTAAACCAGCGTTTTTACGCTTTACGAGCCGTTGTGCCAAATATTTCCAAGATGGACAAAGCATCTTTGTTGGGAGATGCTATTGCTTACATCAACGAGCTTCAAGCAAAACTCAAGATGATGGAATCTGAGAGAGAGCAATTAGGAATCACTTCTAGAGATGGATCATCGTCGGCATTTCCAGCAAACTCCAGAGCAGAAAATCATCAAAGTAGAGCTCCCGATGTCGATATTCAAGCTACACAAGACGGGGTTATCATAAAGGTGAGTTGTTCTATCGACGTTCATCCTATTTCAACACTCATCCAATCATTCAAAGATGCAGAAATCAGTATCGTTGAGTCGAAACTCAATGCTGCAAATGATACTGTCTTCCACACATTCATTATTAAGTCTCAAAGTTCTGAGCAGCTCACAAAGGAGAAGTTGATTGCAGCATTTTCCAAAGAATCCAACTCTTTATAG 1872 0.406 MKIEVGLGGNRLWNEDEKAMVVEVLGVNAFDYLVTNSVSNENLLTAIGSGENLENKLSDLVERSNVSNFSWNYAIFWRISQSKFGDWVLGWGDGCCREPKEEEKEQNLGMKSVVEDEKQQRMRKRVLQKLHTSFGGLDDDNYAFGLDRVTDTEMFFLASMYFSFPNGHGGPGKCFASGKHLWLCDALKSSSSDYCVRSFLAKSVGFKTIVLVPTDLGVVELGSVRMVGESFELLQTIKSVFSTQSSFARVKSISLLDEKRDENAPFSCLKVGESVKNNSNNNGNLQLHHQNNNNHGRVEGIGVPKIFGQDLNSATHFREKLAIRKMDDRPSWGSCPNGNGISFPNGVHGSNWRGSQVVRQHAPADVFAPRPSTSNVSELANGGRHDFVLNNYQQQRKPQMQIDFSGATSRPSVRSIVGESELSDVEASCREENPSPSDDRRPRKRGRKPANGRVEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKMMESEREQLGITSRDGSSSAFPANSRAENHQSRAPDVDIQATQDGVIIKVSCSIDVHPISTLIQSFKDAEISIVESKLNAANDTVFHTFIIKSQSSEQLTKEKLIAAFSKESNSL* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1119 623 MobiDBLite consensus disorder prediction 402 465 - -
Mal5g1119 623 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 241 IPR025610 -
Mal5g1119 623 Coils Coil 500 520 - -
Mal5g1119 623 Gene3D - 450 518 IPR036638 GO:0046983
Mal5g1119 623 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 454 503 IPR011598 GO:0046983
Mal5g1119 623 MobiDBLite consensus disorder prediction 402 416 - -
Mal5g1119 623 MobiDBLite consensus disorder prediction 519 544 - -
Mal5g1119 623 CDD bHLH_AtAIB_like 451 528 - -
Mal5g1119 623 Pfam Helix-loop-helix DNA-binding domain 458 504 IPR011598 GO:0046983
Mal5g1119 623 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 621 - -
Mal5g1119 623 PANTHER MYC 1 621 IPR045084 GO:0003700|GO:0006355
Mal5g1119 623 MobiDBLite consensus disorder prediction 517 544 - -
Mal5g1119 623 MobiDBLite consensus disorder prediction 424 465 - -
Mal5g1119 623 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 457 520 IPR036638 GO:0046983
Mal5g1119 623 SMART finulus 460 509 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1119 Mal-Chr5 19927345 19929216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1119 9 619 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.594 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal5g1119 bHLH-MYC_N 6.9e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1119 - - gmx:100807078 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1119 5 19927345 19929216 Mal5g1119 5 19927345 19929216 ECH
Mal3g4051 3 119148587 119150341 Mal5g1119 5 19927345 19929216 PCT