Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1112 ATGGCAAATCTTGAGTGTAATCTAAGGGCCCCAGGAATTTCTCAACAAGAAAAAGGTGTTAAAAATGATGATTTTTATGAAGAGTTATGGAAGTTGTGTGCAGGACCTTTGGTGGATGTTCCTAACACTGGTGACAGAGTTTTCTACTTTCCTCAAGGTCACATGGAACAACTGCAAGCATCTACTGATCAGGAATTGAATCAAGAAATTCCACATTTCAATCTACCGTCGAAGATTTTATGCCGTGTTGTCAACATTCAGTTGTTGGCTGAGCAAGAAACTGATGAGGTTTATGCTTGTGTTGCTTTGCTTCCAGAATCAGATCAAAATGAGCCTGCAGATCCTGATCCAAATCCTTCTGAATCTCCAAAACAGAAGTTTCACTCATTTTGCAAAATATTAACTGCATCTGATACTAGCACACATGGAGGATTTTCAGTTCTGAGAAAGCATGCTACCGAGTGCTTGCCTCCTTTGGATATGACACAAGCAACCCCAACTCAGGAGCTAGCGGCAAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCACATATATAGAGGTCAACCGAGGAGGCACTTGCTTACAACCGGATGGAGTACATTCGTCGCATCCAAAAGATTGGTGGCTGGAGATGCTTTTGTTTTCCTAAGGGGAGAACACGGGCAACTGAGAGTTGGTGTTAGGCGTATGGCTAAGCAACACAGTCCTATGCCTTCATCTGTAATATCAAGCCAAAGCATGCATCTTGGAGTGCTTGCAACTGCTTCTCATGCTGTTATGACTCGTACCATGTTCGTCGTTTATTACAAACCAAGGACAAGTCAGTTTATTGTTGGTTTGAACAAGTATTTGGAGGCAGTCAACAATCATAAGTTTTCTGTTGGTATGCGATTCAAGATGAGATTTGAAGGAGAGGACTCACCTGAAAGAAGATTTTCTGGCACTATTGTTGGGGTTGGGGATGTGTCTGCAGGATGGTCAAATTCTCAGTGGAGGTCATTGAAGGTGCAATGGGACGAACCAGCAACAATTCCAAGACCAGATAGAGTTTCTTCATGGGAGATAGAGCCTTTTATAGCTTCTCCTACTTTGAATGTCACTCAAACATCAGTGAAGAGCAAAAGATCTAGGCCTGCCGATGTTTCATCTTGCGGTTTTTGGTATCCCGGATCTTCTCAGGCTCACGAGCTTAATTCACCACATATGAATATTACTACTGTCAACCCTTATGCTAACACAAACATTGCATCTAGGCCGAGCGATGGCCCCACATGCAACCGAGTAGAAGATGCGAAAAAGAACGACAATCCTCTAGATTGTTGGTTATTCGGAGTTAATTTAAATCACAACAAATCTTGCAATGTTAATTCTTGTTTAGAGAAAGAACTTGGATGTCCAAGTTTAACCATTGTTACCACTAGTGGTCCCAAAGAATCTATTATCTTTACAAATGCATGTGAAACTGAAAAAGTTCAGAGTCCTAACTATTCACTGTCCAACAAGGGGGTGCAGAAGAAAATAATTTCTGAGGCATCACCAAATGAATGGCAGAACAAGCTGGCTACTGTACCATCCATGAGAACAAGGACTAAGGTGCAAATGCAAGGTGTAGCTGTTGGTCGTGCACTTGACTTAACCATGATAAATGGCTATGATGAACTCATAGATGAAGTTGAGAAATTATTTGATATTAAAGGAGAGTTACGTTCACAAAACAAATGGAGAGTTACTTTCACTGATAATGAAAATGACATGATGCTTGTCGGTGATGATCCATGGCCGGAATTTTGCAACATGGTAAAGAAGATATTCATTTGTTCAAATGAGGAATTAAAGAAAATGAAATGCAAGTTACCTAATTCTTCATTAGAGATTGAAGAGACATTGTTGAGTCTAGATTCACAGAATAGGGATGAGAATCAACAAACTCATGTGACTTAA 1944 0.4053 MANLECNLRAPGISQQEKGVKNDDFYEELWKLCAGPLVDVPNTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKILCRVVNIQLLAEQETDEVYACVALLPESDQNEPADPDPNPSESPKQKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGEHGQLRVGVRRMAKQHSPMPSSVISSQSMHLGVLATASHAVMTRTMFVVYYKPRTSQFIVGLNKYLEAVNNHKFSVGMRFKMRFEGEDSPERRFSGTIVGVGDVSAGWSNSQWRSLKVQWDEPATIPRPDRVSSWEIEPFIASPTLNVTQTSVKSKRSRPADVSSCGFWYPGSSQAHELNSPHMNITTVNPYANTNIASRPSDGPTCNRVEDAKKNDNPLDCWLFGVNLNHNKSCNVNSCLEKELGCPSLTIVTTSGPKESIIFTNACETEKVQSPNYSLSNKGVQKKIISEASPNEWQNKLATVPSMRTRTKVQMQGVAVGRALDLTMINGYDELIDEVEKLFDIKGELRSQNKWRVTFTDNENDMMLVGDDPWPEFCNMVKKIFICSNEELKKMKCKLPNSSLEIEETLLSLDSQNRDENQQTHVT* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1112 647 Pfam Auxin response factor 256 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal5g1112 647 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677
Mal5g1112 647 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 411 622 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal5g1112 647 PANTHER AUXIN RESPONSE FACTOR 11 411 622 - -
Mal5g1112 647 PANTHER AUXIN RESPONSE FACTOR 11 9 401 - -
Mal5g1112 647 Pfam AUX/IAA family 526 564 IPR033389 -
Mal5g1112 647 Pfam AUX/IAA family 571 611 IPR033389 -
Mal5g1112 647 Gene3D - 292 363 - -
Mal5g1112 647 SMART B3_2 130 232 IPR003340 GO:0003677
Mal5g1112 647 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 401 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal5g1112 647 ProSiteProfiles PB1 domain profile. 528 609 IPR000270 GO:0005515
Mal5g1112 647 Gene3D - 524 616 - -
Mal5g1112 647 CDD B3_DNA 128 230 IPR003340 GO:0003677
Mal5g1112 647 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Mal5g1112 647 SUPERFAMILY DNA-binding pseudobarrel domain 121 259 IPR015300 -
Mal5g1112 647 SUPERFAMILY CAD & PB1 domains 523 604 - -
Mal5g1112 647 Gene3D - 127 231 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1112 Mal-Chr5 19762662 19767163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1112 25 615 B3 DNA Binding Superfamily AT4G23980 58.106 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal5g1112 B3 8.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1112 K14486 - gmx:100795763 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1112 5 19762662 19767163 Mal5g1112 5 19762662 19767163 ECH