Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1096 ATGGGAAGAGCTCCTTGTTGTGCCAAAGTTGGATTGCACAAAGGTCCATGGACTACTAAAGAAGATGCATTGCTTACAAAGTATGTTCAAGCTCATGGTGAAGGCCAATGGAAATCACTTCCCAAAAAAGCTGGTCTTCTTAGATGTGGGAAAAGTTGCCGACTTAGATGGATGAATTATCTTAGACCAGATATAAAGAGAGGAAACATAACTCCTGAAGAAGATGATCTTATAATAAGATTACACTCTCTTCTTGGAAATAGATGGTCACTTATAGCTGGAAGATTACCAGGACGAACGGACAATGAGATAAAGAATTACTGGAACACGCATCTTCTTAAAAAGATGCAAAAAAATCAACAAACATGTGATGTTACAACAGATCATGAAGAACAAGAACAACCCAAGAAAAAGAACAACAACAAAAAGAAGAAGAAAAACAACAAGGAGAAGAAAAATGACAAGAAAAAAGGTACAAATAATGATAAACAAGAGGAAGAGAAAATTCAAGTTTATTTACCAAAACCCATTAGGATAAAGGCTTTAAATTTACCAAGAACGGATAGTGGTTCATTTACATATGAATCAAATTCATCAATTGGTAGCCAACAAAAAGAAGGAACAACAGAACAAATGATAAACAATAACGTTGTTTGTGAGGTTGGTGAGATGGAAGAAAATGACGGTTTTGGGTTCACTAGTGATGACCATGACTTAGTCAATGTTGACAATTTAGAGATGGAATGTGAGTCATATTTTGACACTTGTGGTGATCATGGAACACTAGATAGACTCTATGATGAATACTTGCAACTCTTGAATATGGATGTTTGCAATTACGAGTTTGATTCTTCTTTTGCTGAATCGTTCTTTGATTCAAACATTAATTATTAG 894 0.3479 MGRAPCCAKVGLHKGPWTTKEDALLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLLKKMQKNQQTCDVTTDHEEQEQPKKKNNNKKKKKNNKEKKNDKKKGTNNDKQEEEKIQVYLPKPIRIKALNLPRTDSGSFTYESNSSIGSQQKEGTTEQMINNNVVCEVGEMEENDGFGFTSDDHDLVNVDNLEMECESYFDTCGDHGTLDRLYDEYLQLLNMDVCNYEFDSSFAESFFDSNINY* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1096 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal5g1096 297 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 282 - -
Mal5g1096 297 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal5g1096 297 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal5g1096 297 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mal5g1096 297 CDD SANT 16 61 IPR001005 -
Mal5g1096 297 MobiDBLite consensus disorder prediction 188 208 - -
Mal5g1096 297 MobiDBLite consensus disorder prediction 124 138 - -
Mal5g1096 297 Gene3D - 71 112 - -
Mal5g1096 297 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal5g1096 297 PANTHER MYB TRANSCRIPTION FACTOR 1 282 - -
Mal5g1096 297 SMART sant 66 114 IPR001005 -
Mal5g1096 297 SMART sant 13 63 IPR001005 -
Mal5g1096 297 MobiDBLite consensus disorder prediction 123 169 - -
Mal5g1096 297 Gene3D - 14 66 - -
Mal5g1096 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal5g1096 297 Coils Coil 142 166 - -
Mal5g1096 297 CDD SANT 71 112 IPR001005 -
Mal5g1096 297 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal5g1096 297 MobiDBLite consensus disorder prediction 153 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1096 Mal-Chr5 19436742 19438091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1096 1 116 MYB Transcription Factor Family AT5G49330 74.138 1.66e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g1096 Myb_DNA-binding 8.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1096 K09422 - gmx:100101857 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1096 5 19436742 19438091 Mal5g1096 5 19436742 19438091 ECH
Mal3g4057 3 119228764 119229761 Mal5g1096 5 19436742 19438091 PCT