Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1086 ATGAGGCCGGTTTTCGCTGGGAATTTGGAGTACGATACTCGTCAATCAGACCTTGAACGCTTGTTCTCCAAGTATGGCAGAATTGAACGCGTTGACATGAAATCTGGATTTGCTTTTGTCTATTATGAAGATGAGCGTGATGCTGAAGAAGCAATTCGGGCACTTGACAATGTTCCATTCGGTTTTGATAAGCGAAGACTATCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGCCATCGTGATGGCTCAAAGGCAAACCAGAAGCCCACAAAAACTCTATTTGTGATTAACTTTGACCCAATTCGCACTAGAGTTAGTGATATAGAGAGACACTTTAAACCTTATGGGCCGCTTCATCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTATGAAACACAAGAAGATGCTACTAAAGCATTAGAGTGTACAAATATGAGTAAGATACTGGATAGGGTGGTGTCTGTGGAGTATGCTCTGAGGGATGATAGTGATAGGGTCGACAATTATGGTGGCAGTCCCAGAAGAGGAGGGGGCCTTGCTAGATCTCCCAGTCCAGGTTATCGCAGGCGATCAAGTCCTGACTATGGCCGTCCACGCAGTCCTGTGTATGATAGGTATAGTGGACCGGACAGGCGGAGGAGTCCTGATTATGGCAGGAACAGGAGTCCTGATTATGGTAGGAACAGGAGTCCTGAATATGGCAGATACCGCAGTCGTTCACCAGTACGAAGGTCAAGAACTTAG 750 0.468 MRPVFAGNLEYDTRQSDLERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNVPFGFDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVSDIERHFKPYGPLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSDRVDNYGGSPRRGGGLARSPSPGYRRRSSPDYGRPRSPVYDRYSGPDRRRSPDYGRNRSPDYGRNRSPEYGRYRSRSPVRRSRT* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1086 249 MobiDBLite consensus disorder prediction 165 249 - -
Mal5g1086 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Mal5g1086 249 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 203 - -
Mal5g1086 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Mal5g1086 249 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 58 IPR000504 GO:0003723
Mal5g1086 249 SUPERFAMILY RNA-binding domain, RBD 2 163 IPR035979 GO:0003676
Mal5g1086 249 MobiDBLite consensus disorder prediction 206 241 - -
Mal5g1086 249 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mal5g1086 249 SMART rrm1_1 92 158 IPR000504 GO:0003723
Mal5g1086 249 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 203 IPR029537 GO:0000398|GO:0005681
Mal5g1086 249 Gene3D - 83 171 IPR012677 -
Mal5g1086 249 Gene3D - 1 82 IPR012677 -
Mal5g1086 249 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1086 Mal-Chr5 19210510 19212864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1086 4 164 Eukaryotic Initiation Factors Gene Family AT1G49760 23.370 6.38e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1086 K12893 - gmx:100797709 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1086 5 19210510 19212864 Mal5g1086 5 19210510 19212864 ECH