Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1083 ATGATGGTTGCAGATTTGTTTACTTCTGGTCCTACCTCAACTGCAATTTCTCAAATCATAGATACTATTGGTGAGTTCCTATTCTGTGCTAATGATGTACTTGTGAATAAAGATAGTTTTAAGGAACTTAGTTCTTATTTGGAAAGAATTACGCCGATTTTGAAAGAATTGAGGAAAGAAAAAGTGAGTGATTCTGAGGCATTCAACAGTGCCATTGATATTATGAATCGCGAAACGAAAGCTGCAAAGCTACTTGCTCTGGAATGTGGTAAGAAGAGCAAGTTTTATCTGTTAATGAATTGCAGGTCGATTGTAATGCGGTTAGAGAATCACACGAAGGAGCTAAGCAAGGCGCTCGGTCTTCTTCCTTTAGCCGCATCGGGTCTTTCATCCGGGGTATTGGAAGAAATTAAAAAGATGTGTGATAATATGGAGAAAGCTGGATTTAAGGCTGCGGTAGCGGAAGAAGAGATATTAGAGAAAATCGAGTCAGGGATAAGGAAAAACAGTGTTGATCGTTCGTATGCAAATAATTTAATAAATCTCATTGCTGAGGCTGTTGGAATTACAAATGAGAAGTCGACGATGAAGGCTGAACTTGAAGAGTTTAAGAAAGAAATCGAAAATGCTCGCGTTGATAAGAAAAAGGCCGAAGCTATGCAAATGGATCAAATCATTGCTGTCTTGGAAAGAGCTGATGCAGCCTCATCACCGAGCGAAAGGAAACTGAAATACTTCGCGAAACGGCAATCTTTAGGTACTCGAATCTTGGAGCCTTTACAGTCATTTTACTGTCCTATCACACATGATGTTATGGTGGAACCTGTTGAAACTTCATCAGATCAAACATTTGAGAGAAGTGCAATAGAGAAGTGGTTTGAAGAAGGAAACAAGTTGTGTCCTTTGACATTGATTCCTTTAGATACATCGGTTTTGAGACCTAACAAAACTTTGAAACAATCCATAGAAGAATGGAAAGATAGAAATACAATGATTACAATTGCTACATTGAAAGAAAAAATACATCAGTTTGGAGATGATGATGAAGTGATGCAATGTCTAAAAACTCTTGAGGATTTGTGTGAGCAAAGAGAGCAACATAGGGAATGGATGATACTTGAGGACTACATACAAGTTCTTATACAAATTCTCGCTTCGAGAAACCGCGATATAAGGAATCATGCTCTTGTCATCCTTTGCATTCTAGCAAAGGATAATGAAGAAGCTAAGGAAAGAATTGTAATGGTTGATAATGCGATTGAATCAATCGTCCATTCTCTTGGACGACGTCAGGAGGAAAGGAAGTTAGCAGTAGCATTACTGCTTGAATTATCCAAATATGATTTGGCGCGAGAACATATTGGAAAAGTTCAAGGTTGCATACTTCTATTGGTGACTATGTCTAATGGTGATGACAATCAAGCTGCTAGAGATGCAACAGAGCTATTGGATAATCTTTCATACTCTGATCAGAATGTTATACTGATGGCAAAGGCAAATTATTTCAAGCATTTACTGCAACGTCTCTCCACAGGAGCAGATGATGTAAAGATGGTTATGGCCAAAACTTTAGCAGAAATGGAATTAACTGACCACAATAAGGAGTCCTTATTTGATGGTGGTGTACTAGCTCCTCTTCTTCACTTGTTCTTACATAATGATCTTCAGGTGAAAACAGTGGCCACAAAAGCTCTAAAGAATATATCCAGTTTAAAGAGAAATGGACTTGAAATGATTAGACAAGGGGCTGTGCGACCGTTGCTCGATCTCCTTTACCATCATAGCATACACACATCAAGTTTATGGGAAGATGTAGCAGCCATAATTATGCAACTTGCTGCATCAACTATCTCTCAAGATGTCCAAACACCAGTTTTGTTACTAGATTCTGATGATGATGATGTTTTTAACCTTTTCCCTTTAGTCAGTGTGACACAGCCCGGTGTACAACAGAATATTATCCAGACCTTTTATGTTTTGTGTCAATCACCCTCATCTTCATCTATCAAGGCCAAGCTAAATGAGTGCTCGGCTATACCAGAATTGGTTAGGTTGTGTGAGAATGAGAATCTAAACCTAAGAGCAAGTGCTATAAAGTTGTTTTCATGCTTGGTAGAGAGTTGTGATCAATCCATCATACTAGAGAATGTTAATCAGAAATGCATCAATACTTTACTTCAGATCCTAGAATCCTCATCTGATGAAGAGGAAATACTTTCTGCTATGGGAATCATATGCCATCTTCCAGAAATTGATCAGATAACTCAATGGATTCTAGATGCTGGTGTACTTCCAATTATTTATAAATATGTTCAAGACGGTAGAGACCGAGATCAGCAAAGGAGTAACTTAGTAGAGAAAGCAGTCGGTGCCTTACGTCGTTTTACAGTTCCAACACACTTGGAGTGGCAAAAAATTGCAGCTGAAACTGGTATTATAACTGTTTTAGTGCAGTTGCTTGAAAGTGGATCAACCTTGTCAAAACAACGTGCGGCGTTGTGCCTCGCTGAATTTTCTAAAAGCTCGGTTAGTCTCAGCAGACCGATTCCGAAGCAAAAAGGACTACTATGTTGTTTCTCAGCTCCAACCGAAATCGGTTGTAAAGTTCATGGAGGAATATGCACTGTCAAATCATCATTTTGTCTTTTGGTAGCTGAAGCAATTGGACCACTCACAAGGAATCTTGGAGAATCTGATTATGGAGTTTGTGAGGCTTCTTTGGATGCTTTATCGACATTGATTGAAGGTGAAAGACTGGAGAGTGGTAGTGAAGTGCTTGCAAAAGCAAATGCAATACCATTAATAATAAAATTTCTCAGTTCTTCCTCTCTTGAGTTGCAAGAAAAGTCTCTACATGCTTTGGAAAGGATTTTTCAGCTAGTAAAGTTCAAACAGTTGTATGGATCTTCAGCTCAAATGCTTCTAGTTGACTTAACTCAAAGGAGTAATGGTAGAGTTAGATCCATGTCAGCTAGAGTATTGGCACATTTGAATGTTCTTCATGATCAATCTTCATACTTTTAA 3024 0.3846 MMVADLFTSGPTSTAISQIIDTIGEFLFCANDVLVNKDSFKELSSYLERITPILKELRKEKVSDSEAFNSAIDIMNRETKAAKLLALECGKKSKFYLLMNCRSIVMRLENHTKELSKALGLLPLAASGLSSGVLEEIKKMCDNMEKAGFKAAVAEEEILEKIESGIRKNSVDRSYANNLINLIAEAVGITNEKSTMKAELEEFKKEIENARVDKKKAEAMQMDQIIAVLERADAASSPSERKLKYFAKRQSLGTRILEPLQSFYCPITHDVMVEPVETSSDQTFERSAIEKWFEEGNKLCPLTLIPLDTSVLRPNKTLKQSIEEWKDRNTMITIATLKEKIHQFGDDDEVMQCLKTLEDLCEQREQHREWMILEDYIQVLIQILASRNRDIRNHALVILCILAKDNEEAKERIVMVDNAIESIVHSLGRRQEERKLAVALLLELSKYDLAREHIGKVQGCILLLVTMSNGDDNQAARDATELLDNLSYSDQNVILMAKANYFKHLLQRLSTGADDVKMVMAKTLAEMELTDHNKESLFDGGVLAPLLHLFLHNDLQVKTVATKALKNISSLKRNGLEMIRQGAVRPLLDLLYHHSIHTSSLWEDVAAIIMQLAASTISQDVQTPVLLLDSDDDDVFNLFPLVSVTQPGVQQNIIQTFYVLCQSPSSSSIKAKLNECSAIPELVRLCENENLNLRASAIKLFSCLVESCDQSIILENVNQKCINTLLQILESSSDEEEILSAMGIICHLPEIDQITQWILDAGVLPIIYKYVQDGRDRDQQRSNLVEKAVGALRRFTVPTHLEWQKIAAETGIITVLVQLLESGSTLSKQRAALCLAEFSKSSVSLSRPIPKQKGLLCCFSAPTEIGCKVHGGICTVKSSFCLLVAEAIGPLTRNLGESDYGVCEASLDALSTLIEGERLESGSEVLAKANAIPLIIKFLSSSSLELQEKSLHALERIFQLVKFKQLYGSSAQMLLVDLTQRSNGRVRSMSARVLAHLNVLHDQSSYF* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1083 1007 Gene3D - 14 126 IPR036537 GO:0007166
Mal5g1083 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1007 - -
Mal5g1083 1007 CDD RING-Ubox_PUB 263 303 IPR045210 -
Mal5g1083 1007 Gene3D - 863 1005 IPR011989 -
Mal5g1083 1007 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1007 - -
Mal5g1083 1007 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Mal5g1083 1007 SUPERFAMILY ARM repeat 345 997 IPR016024 -
Mal5g1083 1007 Coils Coil 186 220 - -
Mal5g1083 1007 Gene3D - 339 634 IPR011989 -
Mal5g1083 1007 SUPERFAMILY RING/U-box 249 331 - -
Mal5g1083 1007 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 338 IPR013083 -
Mal5g1083 1007 Pfam U-box domain 263 329 IPR003613 GO:0004842|GO:0016567
Mal5g1083 1007 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 541 583 IPR000225 GO:0005515
Mal5g1083 1007 Gene3D - 635 856 IPR011989 -
Mal5g1083 1007 SMART arm_5 364 404 IPR000225 GO:0005515
Mal5g1083 1007 SMART arm_5 709 747 IPR000225 GO:0005515
Mal5g1083 1007 SMART arm_5 751 797 IPR000225 GO:0005515
Mal5g1083 1007 SMART arm_5 666 706 IPR000225 GO:0005515
Mal5g1083 1007 SMART arm_5 918 959 IPR000225 GO:0005515
Mal5g1083 1007 SMART arm_5 530 570 IPR000225 GO:0005515
Mal5g1083 1007 SMART arm_5 447 488 IPR000225 GO:0005515
Mal5g1083 1007 SMART arm_5 408 446 IPR000225 GO:0005515
Mal5g1083 1007 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1083 Mal-Chr5 19188253 19192360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1083 261 1007 U-box Gene Family AT1G76390 28.535 1.11e-60 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1083 - - gmx:100787128 1455.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1083 5 19188253 19192360 Mal5g1083 5 19188253 19192360 ECH
Mal5g1083 5 19188253 19192360 Mal3g4062 3 119258531 119263481 ECH