Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1080 ATGTTTTCTTACAAACTCATAATCATAATTCTCCTCATCACACCCTTCATTCATTTCATATTTCGATACCTATTATTCAAAACAGGTTTAATACACACAACAAAAAAACTCCAAACAAAGTTACAAGATTTTTTCTACCTTTACCAATACCTCAAAATCCCCGAACTAAACCAAAACATGCAACCAAATGTGTTCTATCGTAAAGTCTCACTTTATTTACATTCTCTTCCTTCTATCGAAGATTCTGATTTCACAAATCTCATTACCGGGAATAATCAAAACGACATCGTTTTATCTCTCGACGATAATCAAATCGTCGAAGACAAATTTCTCGGCGCCACGCTCTATTGGTTCAATAAAAAATCCAAACCAAATCAAACCGGTGCATTTGTCCTAAAAGTCAAAAAAACCGATAAACGCCGAATACTCGGCAGTTATCTCCGTCATATAACCACCATGTCCGAAGAAATAGAATACAACGGAAAACGTGATTTACGTTTATTCGTTAATATTACCGGCGTCGGAGGAAGGAGGTGGAGATCGGTTCCGTTCAATCATCCATCGACATTTGAAACGATATTGATGGAAACAGATTTGAAGAACAGAATCAAATCCGATCTCGAATCGTTTCTCAAAGCGAAGAATTTCTACCGGAGAATTGGTCGTGTTTGGAAACGGAGCTTCTTATTATATGGTGAATCCGGTACCGGAAAATCTAGCTTCGTTGCAGCGATGGCGAATTTTCTTTGCTATGATGTATATGATGTTGATCTCTCAAAAATTCGAAGCGATTCAGAGTTGAATTCTCTACTCTTAGAAACAACACCGAAATCGATTATCGTCGTTGAGGATCTTGATCGGTTTATAACGGCGGAATTGGAATCTCCGGCGACGGTTACGGCGTCGGGAATTCAGAATTTCATGGACGGAATTATGACATCGAGTTACTCCGAAGAAAGGATAATGATTTTCACGATGAATAGTAAAGAATTTATTGATCCGAATTTTCTCCGACCGGGTCGGGTCGATGTTCATATACATTTTCCGGTGTGTGATTTTTCTTCTTTCAAAGCTTTGGCGAGTAGTTACTTAGGTGTGAAGGATCACAAGCTGTTTCCGGCGGTGGAGGAGATTTTCCGGCAGGGAGCGAGTTTGAGTCCGGCGGAGATTGGTGAGTTGATGATTGCGAATCGGAACTCGCCGAGTCGGGCTATTAAATCGGTTATCGGAGCGTTGCAAATGGACGGTGATGGGAGAGGGTGTGGGGATATGATCGTACGGCGGATAGAGGATGATGACGTGGAAGATGAAAGTAACCAAGGTGTTCTTTGTGGTGGTGATGGGTTTTCTACGGTTAAGGATTTGAGGAAGATTTATGGTTTGTTTAGATTAAGGAATGTTAAGAGGAATAGGTCGGGTAATTTATTGGTCAATAATGAAGGATGA 1446 0.4046 MFSYKLIIIILLITPFIHFIFRYLLFKTGLIHTTKKLQTKLQDFFYLYQYLKIPELNQNMQPNVFYRKVSLYLHSLPSIEDSDFTNLITGNNQNDIVLSLDDNQIVEDKFLGATLYWFNKKSKPNQTGAFVLKVKKTDKRRILGSYLRHITTMSEEIEYNGKRDLRLFVNITGVGGRRWRSVPFNHPSTFETILMETDLKNRIKSDLESFLKAKNFYRRIGRVWKRSFLLYGESGTGKSSFVAAMANFLCYDVYDVDLSKIRSDSELNSLLLETTPKSIIVVEDLDRFITAELESPATVTASGIQNFMDGIMTSSYSEERIMIFTMNSKEFIDPNFLRPGRVDVHIHFPVCDFSSFKALASSYLGVKDHKLFPAVEEIFRQGASLSPAEIGELMIANRNSPSRAIKSVIGALQMDGDGRGCGDMIVRRIEDDDVEDESNQGVLCGGDGFSTVKDLRKIYGLFRLRNVKRNRSGNLLVNNEG* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1080 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 407 IPR027417 -
Mal5g1080 481 Pfam Domain associated at C-terminal with AAA 35 117 IPR025753 -
Mal5g1080 481 Pfam ATPase family associated with various cellular activities (AAA) 229 349 IPR003959 GO:0005524|GO:0016887
Mal5g1080 481 PANTHER BCS1 AAA-TYPE ATPASE 8 434 - -
Mal5g1080 481 Gene3D - 180 350 IPR027417 -
Mal5g1080 481 SMART AAA_5 224 352 IPR003593 -
Mal5g1080 481 CDD AAA 225 349 - -
Mal5g1080 481 ProSitePatterns Sigma-54 interaction domain ATP-binding region A signature. 228 241 IPR025662 -
Mal5g1080 481 PANTHER BNAC04G00800D PROTEIN 8 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1080 Mal-Chr5 19173644 19175089 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g1080 5 19173644 19175089 Mal5g1080 5 19173644 19175089 ECH
Mal5g1080 5 19173644 19175089 Mal3g4065 3 119282810 119284219 ECH