Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1042 ATGATGCTGAGAGCTAATCCAACGGTTCACGTTCCTCCTTGGCCGAATCATGATGATCCAACGGCTGAGATTTACTCTTCTTATTTCGGTGATGATAACAATGCCGTCACCGGCGCCGGAGATTTTAGTGCCGGAGACTTCTCTTCCGGTGATTACTCTGCCGGAGATCACTCTCCGTACTATCTCCGGGAAGCACTTGCTGCGCTTCAGCGATATCTTCCGTCAAACGAACTCAACGGCGATTCTGATTCAGAAGCTCCGGCGCCGGCGGATTCAACGGTGGATGCATATTCATGCGATCATTTTCGTATGTACGAGTTCAAGATACGAAGATGCGCACGTGGAAGGTCACATGACTGGACGGAGTGTCCATACGCACATCCCGGCGAGAAAGCACGCCGCCGTGATCCGAGGAAGTTTCATTACTCCGGCACGGCGTGTCCTGATTTTCGAAAGGGGAACTGTAAGAAAGGTGACGCGTGTGAACACGCGCATGGTGTTTTCGAGTGTTGGCTTCATCCTGCTCGCTACCGTACTCAGCCGTGTAAAGACGGTACTAGCTGTCGCCGGCGTGTTTGTTTCTTCGCTCACACGCCGGAACAGCTCCGTCTTAACTTTCAGCAGCAAAGTCCTTCATCTTCAAGAGATTCTTATGACGGTTCTCCATTACGACAAATGGTTAATATAACGACGCCGCCAGAATCTCCTTCGCCACCGATGTCACCGATGGCGAACGAGATGGTGGCGTCGTTACGTAATTTACAGTTGGGTAGGATGAAAACTATGCCAGTTAAAAGAAATGTTTCAATTGGGTCACCGGTTTTCGGTTCACCGGTTTTTGGGTCACCGCTTCGATCCGGTTTTTTAAGTTTACCAAATACACCAACAAAAAAACCGGGTTTGAGTCGGGCTGGGTTTGATTTATGGGATCAGAGTTGTGAAGAGGAGCCTATGATGGAGAGAGTTGAGAGTGGAAGAGATATTAGGGCTAAGATGTTTGAGAAATTAAGCAAAGAAAATTCTTTGGAGAATTCGGATTCAGGTTTGGATATGGGTCAACCCGGTCCAGACGTTGGGTGGGTTACTGAGTTGTTGAAATGA 1101 0.4877 MMLRANPTVHVPPWPNHDDPTAEIYSSYFGDDNNAVTGAGDFSAGDFSSGDYSAGDHSPYYLREALAALQRYLPSNELNGDSDSEAPAPADSTVDAYSCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEHAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLNFQQQSPSSSRDSYDGSPLRQMVNITTPPESPSPPMSPMANEMVASLRNLQLGRMKTMPVKRNVSIGSPVFGSPVFGSPLRSGFLSLPNTPTKKPGLSRAGFDLWDQSCEEEPMMERVESGRDIRAKMFEKLSKENSLENSDSGLDMGQPGPDVGWVTELLK* 367
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1042 366 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 5 365 - -
Mal5g1042 366 Gene3D - 142 205 - -
Mal5g1042 366 MobiDBLite consensus disorder prediction 337 358 - -
Mal5g1042 366 ProSiteProfiles Zinc finger C3H1-type profile. 142 168 IPR000571 GO:0046872
Mal5g1042 366 PANTHER UNKEMPT FAMILY MEMBER 5 365 IPR045234 -
Mal5g1042 366 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Mal5g1042 366 SMART c3hfinal6 176 199 IPR000571 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal5g1042 Mal-Chr5 18179378 18180478 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1042 87 203 C2H2 Transcription Factor Family AT5G12850 69.231 2.06e-56 194
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g1042 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1042 - - aprc:113867365 522.316