Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1040 ATGGGAAGGGCTCCATGTTGTGACAAAACAAAAGTGAAAAGAGGACCATGGTCTAATGAAGAAGATGATATTCTCAAAAATTACATTCACAACAATGGCAATGCTGGTAATTGGATAGCTCTCCCTCAAAAAGCAGGTCTAAATCGTTGTGGAAAGAGTTGTCGTCTAAGATGGTTGAATTATTTAAGGCCTAATATCAAGCTTGGAGGTTTCACTGAGGAGGAAGACAACATTATATCCACCCTTTATGGCACCATAGGAAGCAGGTGGTCCTTTATAGCAGCTCAATTACCAGGAAGAACAGATAATGATGTGAAAAATCACTGGAACACTAAACTAAAGAAAAAGTTTTTAGTAGGAAATTCATCCACAAGCAACAATATTTACACTTTCAACAATGCTACTAGTTCTGACCACTTTTCAAGTACTTTGACTTTTCAACCTCAACTTGAAGTACCCTTTGTCTTTGATCAAAAACATGACACACCTTGCTTTGACTCCTACAATTTTTTGGATTTGAAACAAACACCAATTAATAATATTCCTTTACCACTTAAAATGGAATCAGAAGCTTTTTACACTGGAAGCAGTTTGAGTAGTAGCTGTAGTACTACACCAACCACCAAGGAAATTTCAAGTTTTTCAAGTGCACCTTTGTTAGAAGAACAGAACAATGATGATAATCAATGTTTTGGATATGACCATGATGATGCAATTCTTCTTGAAATGTTTCTTGATGGTTTATTGAATCATGGACCCTCATCTGGTTAA 771 0.3606 MGRAPCCDKTKVKRGPWSNEEDDILKNYIHNNGNAGNWIALPQKAGLNRCGKSCRLRWLNYLRPNIKLGGFTEEEDNIISTLYGTIGSRWSFIAAQLPGRTDNDVKNHWNTKLKKKFLVGNSSTSNNIYTFNNATSSDHFSSTLTFQPQLEVPFVFDQKHDTPCFDSYNFLDLKQTPINNIPLPLKMESEAFYTGSSLSSSCSTTPTTKEISSFSSAPLLEEQNNDDNQCFGYDHDDAILLEMFLDGLLNHGPSSG* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1040 256 CDD SANT 71 113 IPR001005 -
Mal5g1040 256 Gene3D - 7 68 - -
Mal5g1040 256 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mal5g1040 256 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mal5g1040 256 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Mal5g1040 256 Gene3D - 70 139 - -
Mal5g1040 256 CDD SANT 16 62 IPR001005 -
Mal5g1040 256 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mal5g1040 256 PANTHER OS09G0431300 PROTEIN 1 210 - -
Mal5g1040 256 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mal5g1040 256 SMART sant 13 64 IPR001005 -
Mal5g1040 256 SMART sant 67 115 IPR001005 -
Mal5g1040 256 PANTHER TRANSCRIPTION FACTOR RAX3 1 210 - -
Mal5g1040 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mal5g1040 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1040 Mal-Chr5 18139421 18141271 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g1040 1 118 MYB Transcription Factor Family AT5G65790 80.508 1.66e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g1040 Myb_DNA-binding 1.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1040 K09422 - gmx:778160 285.034