Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g1007 ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGTGTTCCATGGACAGAAGAAGAGCATAGAAAATTCCTTGTTGGACTTGAGAAGCTTGGAAAAGGAGATTGGAGGGGTATCTCTAGAAACTATGTGACTACAAGAACACCAACACAAGTTGCAAGCCATGCTCAAAAGTACTTTATTCGACTTGCAACCTTGAATAAGAAGAAGAGACGTTCAAGTCTCTTTGACATGGTTGGTAGCGGCAACACAAACAGAACAGTTGATCATGAAGTTGAGAAGGATGCAACTTTGTCACTACTAATAAACTCACTTCAAGAACAAACCAAATCAGTTGATTATGATATGCAAAAAATTGAAGATGTTGAAGTTGAAGATTGTGAAGAAGCAGAACATAAAGATGTGCCAGATTGGCTACATCCTCTAACAAAGTCTTTAAATATGACATTGGTGATACCAAATTCTTCAAATGCAGCAGCACCTGATCTTGAGCTAACTCTGGCTGGGTCAAAGTCAAAGAACATGGAACAAGATAAAACATCCTCAAGTTCATTTCTTATTGGGCCAATTAGTGTAACTTAA 579 0.3834 MGRKCSHCGNIGVPWTEEEHRKFLVGLEKLGKGDWRGISRNYVTTRTPTQVASHAQKYFIRLATLNKKKRRSSLFDMVGSGNTNRTVDHEVEKDATLSLLINSLQEQTKSVDYDMQKIEDVEVEDCEEAEHKDVPDWLHPLTKSLNMTLVIPNSSNAAAPDLELTLAGSKSKNMEQDKTSSSSFLIGPISVT* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g1007 192 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 12 181 - -
Mal5g1007 192 Pfam Myb-like DNA-binding domain 14 59 IPR001005 -
Mal5g1007 192 SUPERFAMILY Homeodomain-like 12 63 IPR009057 -
Mal5g1007 192 MobiDBLite consensus disorder prediction 169 192 - -
Mal5g1007 192 CDD SANT 14 59 IPR001005 -
Mal5g1007 192 SMART sant 11 61 IPR001005 -
Mal5g1007 192 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Mal5g1007 192 ProSiteProfiles Myb-like domain profile. 14 59 IPR001005 -
Mal5g1007 192 ProSiteProfiles SANT domain profile. 10 63 IPR017884 -
Mal5g1007 192 Gene3D - 13 65 - -
Mal5g1007 192 PANTHER TRANSCRIPTION FACTOR KUA1 12 181 - -
Mal5g1007 192 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 12 61 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g1007 Mal-Chr5 17592686 17594584 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mal5g1007 Myb_DNA-binding 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g1007 - - gmx:778053 193.741