Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0960 ATGGAGTTGATGCAAGAAGTGAAAGGCTATTCACAAGAGGAATTAGAGGAAGATGAAGAAGAAATCATCACAAGAACATCAACAAAAGAAGAAGAAGAAAGTAGTAGTAAGCAACAATTACAACACTGCCCTTTTTCTTCACCTTCTAATTTCTCTTTATCTTCTTCTTCACCTTCAACAACTCATCATAATCATCAAGATCATGTCACAAATATTCCTCATCAACAAAATCAATGGCTAGGAATGAATCATCATCACTCTCCAGAGTCTCACAATTCATCATCTAAAGGATTAGGGTTATTACACCAACATCATCATCAAGATGCAACAACCTCAAATTTCACAAAGCAAATAGATTTCATGGAATTGTCACTTGGTAACAACAACAATAACAAAAACAAAGATGTTATTAATGTTCCTGTTCCAGAACAAGAACAACAACAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGAAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTCAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAGAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGTGACATTGTTTCTTTTCAACGCGGCGTCGGCGAATTGTTTAGACATAGGTTGTTTATAGATTGGAGGAGAAGATCTAATCATAATCATAATATTGATCCTTCATCAGCAACACTTTTCACCCCTTTCTTTCTTCCTAATCAACAGCAATATTCTATTAGGTGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCTACAGTACCACAAAGGTTGCAACATCAGCAACAAAATTATCATGACCCTTTACAGAATCAGATGAATTTTAATTATAATATGTTTCCATTTCATCAACATGGTGGTGGAAATGTGAATCATCAATACAATTTTCATCATCATGATCCAAGTTCAGTTTTTTACATGAGATCATTAGCACCATCACCATCATCAATGCCTCAAGGAAGCTTAAGTACAAGACAACAACATCAGCAACAAGAAGGAGGAAGCAATGCTTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATTATCATCATCACCATGGAAATTTAAGTAGTAGTAATAGTAGTGCTAGTACTAGTACTACTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAGTGTGGTGGTTCTTCAACAAGTGATGATAACTTAGCTTCTCCATCTTCAATAGTACCATCACTTCAACATTTGAAGGTACCTCATCATGAAGAAACACTTTCAACATCAACAAGATTTGAAGAGGATAAGAGAAGAGAAGAAGCTTCAATGATTTTTGGTTTAGACACTTCTTTGCAATATCATAATTACCAACAACAATGA 1512 0.3485 MELMQEVKGYSQEELEEDEEEIITRTSTKEEEESSSKQQLQHCPFSSPSNFSLSSSSPSTTHHNHQDHVTNIPHQQNQWLGMNHHHSPESHNSSSKGLGLLHQHHHQDATTSNFTKQIDFMELSLGNNNNNKNKDVINVPVPEQEQQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWRRRSNHNHNIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTVPQRLQHQQQNYHDPLQNQMNFNYNMFPFHQHGGGNVNHQYNFHHHDPSSVFYMRSLAPSPSSMPQGSLSTRQQHQQQEGGSNASNMIIDSVPVSHYHHHHGNLSSSNSSASTSTTNGAAKRLRLFGVNMECGGSSTSDDNLASPSSIVPSLQHLKVPHHEETLSTSTRFEEDKRREEASMIFGLDTSLQYHNYQQQ* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0960 503 SUPERFAMILY DNA-binding pseudobarrel domain 154 262 IPR015300 -
Mal5g0960 503 MobiDBLite consensus disorder prediction 22 37 - -
Mal5g0960 503 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 76 472 - -
Mal5g0960 503 Pfam B3 DNA binding domain 158 262 IPR003340 GO:0003677
Mal5g0960 503 ProSiteProfiles B3 DNA-binding domain profile. 158 263 IPR003340 GO:0003677
Mal5g0960 503 MobiDBLite consensus disorder prediction 361 396 - -
Mal5g0960 503 SMART B3_2 158 263 IPR003340 GO:0003677
Mal5g0960 503 MobiDBLite consensus disorder prediction 38 68 - -
Mal5g0960 503 MobiDBLite consensus disorder prediction 1 68 - -
Mal5g0960 503 CDD B3_DNA 156 245 IPR003340 GO:0003677
Mal5g0960 503 MobiDBLite consensus disorder prediction 406 423 - -
Mal5g0960 503 Gene3D - 151 270 IPR015300 -
Mal5g0960 503 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 76 472 IPR044800 GO:0003700
Mal5g0960 503 MobiDBLite consensus disorder prediction 360 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0960 Mal-Chr5 16804221 16805732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0960 140 445 RAV Transcription Factor Family AT2G46870 46.580 4.77e-74 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal5g0960 B3 4.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0960 - - mtr:MTR_8g023990 790.415