Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0957 ATGACAACCTTATTTCCTCCAACTCTTAACTATGTTCCTGTTGGATTCAGATTCCGTCCAACAGATGAAGAGCTTGTAAAATACTATCTGAAAAACAAGTTACTTGGTAATGATTTCATTGTAAATAATGTTATCGCCGAAGTTGATGTATTCAAGTTCGTACCTTGGGACTTACCAGCTACTGGAAATGGATGTGCTATTAAGATTAAGGGTACTAATGACAAAGTTATTGCCACTAAGAAGACTCTTGTTTACTACTGTAAAGGTACTGGAAATGAACATGATGTTAAGACCGATTGGGTTATACACGAGTATCATGATGCTACTGTCACCTTTGATGATGATGATGATGATACACAGCTGGGGGATCCCATTCCCAGCACACAAATGACAACCTCTTTTCCTTTCATTCATGATTCTCTTCCTGTTGGATTCAGATTTTGTCCAACAGGTGAAGAGCTAGTTCACCACTACCTCAGAAACAAGTTGCTTGGTAATGACGCCATTGTAAACAACGTTATAGCTGAAGTTGATGTTTGCAAGATTGATAGGACTACAAAAAATGGTTTTTGGAAAGCTACAGGAAAGGACAGGAACATTAAGATTAGGGGAACCAATGAAGTTATTGGGATTAAGAAGACTCTTGTTTACCATGAAGATTCTGTTCCTGTTGTTAAGACCAATTGGATCATTCATGAGTATCATGATGCCACTTTTGATGATCACCAGAGAACTCTTGTTTTATGCCGCTTGATAAGTAAAGCTGCTAAAAAAATATGTGATGAGCTGGGGGATCCCATTCCCAGCACACAAATGACAACCTCTTTTCCTTTCATTCATGATTCTCTTCCTGTTGGATTCAGATTTTGTCCAACAGGTGAAGAGCTAGTTCACCACTACCTCAGAAACAAGTTGCTTGGTAATGACGCCATTGTAAACAACGTTATAGCTGAAGTTGATGTTTGCAAGTTCGAACCTTCGGACTTATCCGCTTGTTCTGCGATAAAATCTGATGATCCGGAATGGTTTTTCTTGTGTCCTATTAATTACAAATATGCAAAGAGTAAAAGGATTGATAGGACTACAAAAAATGGTTTTTGGAAAGCTACAGGAAAGGACAGGAACATTAAGATTAGGGGAACCAATGAAGTTATTGGGATTAAGAAGACTCTTGTTTACCATGAAGATTCTGTTCCTGTTGTTAAGACCAATTGGATCATTCATGAGTATCATGATGCCACTTTTGATGATCACCAGAGAACTTTTGTTTTATGTCACTTGATGAAGAAAGCTCAGAAAAATACTGAAGTAGAAGCTGATGCACTGACATGGGATGAAGGTGAGCAGAGTATACACATGAGTTTGGACTATGAAAATCAAGAAACAGTAGAAGAAATTCCAGATGTAAGTGGTACTTTGCCAGAAATTAATATGGAATCAATATTTGAGGAACCTTACCAAGTAGACAATTACTTTCCCTTCTCTACTCAACAATGTTCAATCTACGAAAATGAGCCGGGAGGATCATTCTCCAACTCAGAATTTCAATGTGCTAATTTTAGAAATGAAGACATTGTTATTCGGAGTCCGTTTAAAACCATCGAAGAGGAAAATAAGTTCGTCAATTCGATGTTTGTTGACAGGGATTTTGTTACTAGTGAAAATAGTAGACAATCATAA 1680 0.3744 MTTLFPPTLNYVPVGFRFRPTDEELVKYYLKNKLLGNDFIVNNVIAEVDVFKFVPWDLPATGNGCAIKIKGTNDKVIATKKTLVYYCKGTGNEHDVKTDWVIHEYHDATVTFDDDDDDTQLGDPIPSTQMTTSFPFIHDSLPVGFRFCPTGEELVHHYLRNKLLGNDAIVNNVIAEVDVCKIDRTTKNGFWKATGKDRNIKIRGTNEVIGIKKTLVYHEDSVPVVKTNWIIHEYHDATFDDHQRTLVLCRLISKAAKKICDELGDPIPSTQMTTSFPFIHDSLPVGFRFCPTGEELVHHYLRNKLLGNDAIVNNVIAEVDVCKFEPSDLSACSAIKSDDPEWFFLCPINYKYAKSKRIDRTTKNGFWKATGKDRNIKIRGTNEVIGIKKTLVYHEDSVPVVKTNWIIHEYHDATFDDHQRTFVLCHLMKKAQKNTEVEADALTWDEGEQSIHMSLDYENQETVEEIPDVSGTLPEINMESIFEEPYQVDNYFPFSTQQCSIYENEPGGSFSNSEFQCANFRNEDIVIRSPFKTIEEENKFVNSMFVDRDFVTSENSRQS* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0957 559 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 14 58 - -
Mal5g0957 559 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 143 182 - -
Mal5g0957 559 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 14 58 - -
Mal5g0957 559 ProSiteProfiles NAC domain profile. 283 430 IPR003441 GO:0003677|GO:0006355
Mal5g0957 559 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 182 254 - -
Mal5g0957 559 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 285 542 - -
Mal5g0957 559 SUPERFAMILY NAC domain 8 108 IPR036093 GO:0003677|GO:0006355
Mal5g0957 559 Gene3D NAC domain 64 122 IPR036093 GO:0003677|GO:0006355
Mal5g0957 559 Gene3D NAC domain 181 259 IPR036093 GO:0003677|GO:0006355
Mal5g0957 559 Gene3D NAC domain 292 435 IPR036093 GO:0003677|GO:0006355
Mal5g0957 559 ProSiteProfiles NAC domain profile. 12 254 IPR003441 GO:0003677|GO:0006355
Mal5g0957 559 SUPERFAMILY NAC domain 272 430 IPR036093 GO:0003677|GO:0006355
Mal5g0957 559 SUPERFAMILY NAC domain 130 253 IPR036093 GO:0003677|GO:0006355
Mal5g0957 559 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 60 106 - -
Mal5g0957 559 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 60 106 - -
Mal5g0957 559 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 182 254 - -
Mal5g0957 559 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 285 542 - -
Mal5g0957 559 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 143 182 - -
Mal5g0957 559 Gene3D NAC domain 21 63 IPR036093 GO:0003677|GO:0006355
Mal5g0957 559 Pfam No apical meristem (NAM) protein 142 182 IPR003441 GO:0003677|GO:0006355
Mal5g0957 559 Pfam No apical meristem (NAM) protein 183 235 IPR003441 GO:0003677|GO:0006355
Mal5g0957 559 Pfam No apical meristem (NAM) protein 284 411 IPR003441 GO:0003677|GO:0006355
Mal5g0957 559 Pfam No apical meristem (NAM) protein 13 62 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0957 Mal-Chr5 16754558 16768773 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0957 281 443 NAC Transcription Factor Family AT3G49530 48.876 5.26e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal5g0957 NAM 4.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0957 - - mtr:MTR_8g023900 582.022