Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0954 ATGACAACCTTATTTCCTCCAACTCTTGACTGTGTTCCTGTTGGATTCAGATTCCGTCCAACAGATGAAGAGCTTGTTAACTACTATCTCAAAAACAAGTTACTTGGTAATGATTCCATTGTTAACAATGTTATAGCTGAAGTTGATGTTTGCAAGTTTGAACCTTGTGACTTACCAGCTTGTTCTGTGATAAAATCTGATGATCCGGAATGGTTTTTCATGTGTCCTCTTGAATACAAGTATGCAAAGAGTAAAAGGATTAGTAGGAAAACAAAAAATGGTTTTTGGAAAGCTACTGGAAAGGACCGTAACATTAAGGTTAGGGGTACCAATAATGTTATTGGGATTAAGAAGACACTTGTTTACTATTATGGTTCTGTTCCTGGTGTTAAAAGCTATTGGGTGATTCATGAGTATCATGCTACCACTTTTGATGATAACCAGGTTTGTTTTGTTACAACAAGGTTTTAA 471 0.3567 MTTLFPPTLDCVPVGFRFRPTDEELVNYYLKNKLLGNDSIVNNVIAEVDVCKFEPCDLPACSVIKSDDPEWFFMCPLEYKYAKSKRISRKTKNGFWKATGKDRNIKVRGTNNVIGIKKTLVYYYGSVPGVKSYWVIHEYHATTFDDNQVCFVTTRF* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0954 156 ProSiteProfiles NAC domain profile. 12 156 IPR003441 GO:0003677|GO:0006355
Mal5g0954 156 SUPERFAMILY NAC domain 9 148 IPR036093 GO:0003677|GO:0006355
Mal5g0954 156 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 8 152 - -
Mal5g0954 156 Gene3D NAC domain 21 152 IPR036093 GO:0003677|GO:0006355
Mal5g0954 156 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 152 - -
Mal5g0954 156 Pfam No apical meristem (NAM) protein 13 140 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0954 Mal-Chr5 16732300 16732845 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0954 8 145 NAC Transcription Factor Family AT4G35580 56.835 7.86e-51 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal5g0954 NAM 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0954 - - mtr:MTR_8g023840 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0954 5 16732300 16732845 Mal5g0954 5 16732300 16732845 ECH