Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0935 ATGAAAAGAGTAAAAAGTTTAAGAGATCAACAACTTTTGGATTTTGGAAAGCCACTCGAAATGGATGTGATATTAAGATTAAGGGTACTAATGACAAAGTTATTGCCACTAAGAAGACTCTTGTTTACTACTGGAAAGGTACTGGAAATGAACGTGATGTTAAGACCGATTGGGTATCATGATGCTACTCTCACCTTTGATGATGATACACAGAGAACTCTTGTTTTATGCCGCTTGATAAGTAAAGCTGCTAAAAAAATATGTGATGAGCTGGGGGATCCCATTCCCAGCACACAAATGACAACCTCTTTTCCTTTCATTCATGATTCTCTTCCTGTTGGATTCAGATTTTGTCCAACAGGTGAAGAGCTAGTTCACCACTACCTCAGAAACAAGTTGCTTGGTAATGACGCCATTGTAAACAACGTTATAGCTGAAGTTGATATTTGCAAGTTCGAACCTTCGGACTTATCCGCTTGTTCTGCGATAAAATCTGATGATCCGGAATGGTTTTTCTTGTGTCCTATTAATTACAAATATGCAAAGAGTAAAAGGATTGATAGGACTACAAAAAATGGTTTTTGGAAAGCTACAGGAAAGGACAGGAACATTAAGATTAGGGGAACCAATGAAGTTATTGGGATTAAGAAGACTCTTGTTTACCATGAAGATTCTGTTCCTGTTGTTAAGACCAATTGGATCATTCATGAGTATCATGATGCCACTTTTGATGATCACCAGAGAACTTTTGTTTTATGTCACTTGATGAAGAAAGCTCAGAAAAATACTGAAGTAGAAGCTGATGCACTGACATGGGATGAAGGTGAGCAGAGTATACACATGAGTTTGGACTATGAAAATCAAGAAACAGTTGAAGAAATTCCAGATGTAAGTGGTACTTTGCCAGAAATTAATATGGAATCAATATTTGAGGAACCTTACCAAGTAGACAATTACTTTCCCTTCTCTACTCAACAATGTTCAATCTACGAAAATGAGCCGGGAGGATCATTCTCCAACTCAGAATTTCAATGTGCTAATTTTAGAAATGAAGACATTGTTATTCGGAGTCCGTTTAAAACCATCGAAGAGGAAAATAAGTGGATAGGTTTTTGTAAGAATAAGTTTAAGGATCAAAGATCGGGAAGAGCTACAAAAAATGGTTTTTGGAAAGCTACAGGAAAGGACAGGAACATTAAGATTAGGGGAACCAATGAAGTTATTGGGATTAAGAAGACTCTTGTTTACCATGAAGATTCTGTTCCTGTTGTTAAGACCAATTGGATCATTCATGAGTATCATGATGCCACTTTTGGTGATCACCAGGAAAATGTTTCTGATTTTGAAGCATTGGCTTAA 1359 0.3679 MKRVKSLRDQQLLDFGKPLEMDVILRLRVLMTKLLPLRRLLFTTGKVLEMNVMLRPIGYHDATLTFDDDTQRTLVLCRLISKAAKKICDELGDPIPSTQMTTSFPFIHDSLPVGFRFCPTGEELVHHYLRNKLLGNDAIVNNVIAEVDICKFEPSDLSACSAIKSDDPEWFFLCPINYKYAKSKRIDRTTKNGFWKATGKDRNIKIRGTNEVIGIKKTLVYHEDSVPVVKTNWIIHEYHDATFDDHQRTFVLCHLMKKAQKNTEVEADALTWDEGEQSIHMSLDYENQETVEEIPDVSGTLPEINMESIFEEPYQVDNYFPFSTQQCSIYENEPGGSFSNSEFQCANFRNEDIVIRSPFKTIEEENKWIGFCKNKFKDQRSGRATKNGFWKATGKDRNIKIRGTNEVIGIKKTLVYHEDSVPVVKTNWIIHEYHDATFGDHQENVSDFEALA* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0935 452 Pfam No apical meristem (NAM) protein 361 434 IPR003441 GO:0003677|GO:0006355
Mal5g0935 452 Pfam No apical meristem (NAM) protein 112 239 IPR003441 GO:0003677|GO:0006355
Mal5g0935 452 Gene3D NAC domain 120 263 IPR036093 GO:0003677|GO:0006355
Mal5g0935 452 Gene3D NAC domain 311 449 IPR036093 GO:0003677|GO:0006355
Mal5g0935 452 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 113 363 - -
Mal5g0935 452 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 367 434 - -
Mal5g0935 452 SUPERFAMILY NAC domain 100 258 IPR036093 GO:0003677|GO:0006355
Mal5g0935 452 ProSiteProfiles NAC domain profile. 111 258 IPR003441 GO:0003677|GO:0006355
Mal5g0935 452 SUPERFAMILY NAC domain 362 438 IPR036093 GO:0003677|GO:0006355
Mal5g0935 452 ProSiteProfiles NAC domain profile. 316 452 IPR003441 GO:0003677|GO:0006355
Mal5g0935 452 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 113 363 - -
Mal5g0935 452 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 367 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0935 Mal-Chr5 16356429 16361765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0935 364 434 NAC Transcription Factor Family AT3G49530 49.333 6.01e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal5g0935 NAM 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0935 - - mtr:MTR_8g023900 432.95