Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0893 ATGGCTTCTTCAGATGGAAACAAGAAATCAACAAAACGTAAGAGAAACGTTGAAATCAAGAAAGAAGAACAATCTAACAACTGTGACGCCTTCTCAAATCGCAAACTAGGGCTCTTCAACAAAGTCACAGAACTATCCATTCTATGCAATGCAAAAACTGCAATGATCACCACTTCACCAAACGCAAAACTCTATGCATGTGGATACCCTAACCCCGATTCCGTCTTTAAACACTTTCTTGGTAAGGAAAATTCACTCATGGAAACTGAAAAAAGGAAGCAAGATGAGGGCACAATTGAAACGTTAAGGCTTGAACATGAGGCAATTCAAGAACGATTGAATGAAGAGAAGAAAATTTTACAAGGTGTAATAGAGAAAAACAAGAGTAGTTCATGTTTTCCTTCTTGGTGGGTTCAATCAATTGATGATGATATGGGTTTGGAATCTCTAGAGCAATTTAAGAGTGCTTTGGAAAATTTGAAGCTTAATTTAGTTGCATCCTTGGAAGAGAAAAAGGTTCAGATTAATTCCAATTCCTCGTCAACTTCCAATATTATATAA 561 0.3636 MASSDGNKKSTKRKRNVEIKKEEQSNNCDAFSNRKLGLFNKVTELSILCNAKTAMITTSPNAKLYACGYPNPDSVFKHFLGKENSLMETEKRKQDEGTIETLRLEHEAIQERLNEEKKILQGVIEKNKSSSCFPSWWVQSIDDDMGLESLEQFKSALENLKLNLVASLEEKKVQINSNSSSTSNII* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0893 186 Coils Coil 150 170 - -
Mal5g0893 186 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Mal5g0893 186 Coils Coil 99 119 - -
Mal5g0893 186 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Mal5g0893 186 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Mal5g0893 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 66 IPR002100 GO:0003677|GO:0046983
Mal5g0893 186 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 9 175 - -
Mal5g0893 186 MobiDBLite consensus disorder prediction 1 24 - -
Mal5g0893 186 Coils Coil 7 27 - -
Mal5g0893 186 PANTHER MADS BOX PROTEIN 9 175 - -
Mal5g0893 186 Gene3D - 11 106 IPR036879 GO:0003677|GO:0046983
Mal5g0893 186 MobiDBLite consensus disorder prediction 7 24 - -
Mal5g0893 186 SUPERFAMILY SRF-like 14 81 IPR036879 GO:0003677|GO:0046983
Mal5g0893 186 SMART madsneu2 12 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0893 Mal-Chr5 15594305 15594865 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0893 8 161 Type I MADS-box Gene Family AT5G60440 31.056 7.77e-17 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal5g0893 SRF-TF 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0893 - - cam:101507050 178.718