Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0889 ATGACAGATCAACTTCTTGCTGCTTTGGGATATACTATGAAAGAAATTATTGCTGCTAAATATGTCATAATGCCAGATCACCGTGAAAAAATGACTTGGACACGTCCCCTTGTTGCTGGACCTTTCCAAATATTTCCAAGTACTTATGGAGCTAAACCTGGAAAATCGACTTCGACAGATTCCCTTCTTGCTGCTTCTGGAATTGAAGTGCAAGAGGTTGCCAGAGATGTCCAAGTAACAGATACCTTTGCTGCTGATGCTGAACACTGTATCTCTAATAAGTCCACCATGGCGACTCAGATCAACCAACAGGCGAAGCTATGTTGGGGAGATTTAGAAGACGACGACGACGACGACCACGATCTAAAGTTTCTGTTACCACCGTGTCAGGTAATCGGACCGGACGAAAACGGAATCAAAAAGAAGATTGAATATGAATTTGATGATGATGGTAACACTGTTAAGGTCACAACAGTTTATCGCACAAGGAAACTCGCTAGCTCGCGTGTTAGTAAGCGCGCCGTTGAACGACGTAAATGGTCCAAGTTTGGTGATGCTGTTAAAGGTGATGCTGGTAGTCGGCTTACTATGGTTTCGACTGAAGAGATTTTTTTTGATCTCCCTAAGACTATTGGTTCCAATAATGTGGAGCAACCGGTTGACCCATTAGGTGCAGCAGGTGCTGTTCTTATGGTATGCAGATCTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCAAATAAGGATCTCTCAAAACCGACTGAGGGATTTGTTGATAAGCCTCCAGTAGCTGTTTCAAATAATGGTGCATATGTACCTCCTAGCTTGAGAGGTGGTGCAGAGAGGACTGGAGGGTCAGACATGAGGCGGAGGAACGATGAGAATTCTGTGCGGGTAACCAACCTCTCGGAGGATACGAGGGAGCCTGATTTGCATGAGCTATTCAGCCCTTTTGGTTCTGTGAGCAGAGTCTATGTTGCTATGGATAAAAATACTGGTGTGAGTAGGAGGTTTGGCTTTGTCAACTTCGTCAGCAGAGAAGATGCTCAGAGAGCTATTAACAAACTCAATGGCTATGGCTACGACAACCTCATCCTGAAGGTTGAATGGGCCACCCCAAGAACAACCTAA 1137 0.4503 MTDQLLAALGYTMKEIIAAKYVIMPDHREKMTWTRPLVAGPFQIFPSTYGAKPGKSTSTDSLLAASGIEVQEVARDVQVTDTFAADAEHCISNKSTMATQINQQAKLCWGDLEDDDDDDHDLKFLLPPCQVIGPDENGIKKKIEYEFDDDGNTVKVTTVYRTRKLASSRVSKRAVERRKWSKFGDAVKGDAGSRLTMVSTEEIFFDLPKTIGSNNVEQPVDPLGAAGAVLMVCRSCGKKGDHWTSRCPNKDLSKPTEGFVDKPPVAVSNNGAYVPPSLRGGAERTGGSDMRRRNDENSVRVTNLSEDTREPDLHELFSPFGSVSRVYVAMDKNTGVSRRFGFVNFVSREDAQRAINKLNGYGYDNLILKVEWATPRTT* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0889 378 CDD eIF3G 137 251 IPR024675 -
Mal5g0889 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Mal5g0889 378 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 103 378 - -
Mal5g0889 378 Gene3D - 271 378 IPR012677 -
Mal5g0889 378 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 106 377 IPR017334 GO:0003743|GO:0005737|GO:0005852
Mal5g0889 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 365 IPR000504 GO:0003723
Mal5g0889 378 CDD RRM_eIF3G_like 298 373 IPR034240 -
Mal5g0889 378 Pfam Eukaryotic translation initiation factor 3 subunit G 131 252 IPR024675 -
Mal5g0889 378 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 103 378 - -
Mal5g0889 378 SMART rrm1_1 298 371 IPR000504 GO:0003723
Mal5g0889 378 MobiDBLite consensus disorder prediction 254 298 - -
Mal5g0889 378 SUPERFAMILY RNA-binding domain, RBD 295 376 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0889 Mal-Chr5 15486419 15496314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0889 103 378 Eukaryotic Initiation Factors Gene Family AT3G11400 59.748 1.50e-128 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0889 K03248 - gmx:100818725 389.037